PDB entry 3kvv

View 3kvv on RCSB PDB site
Description: Trapping of an oxocarbenium ion intermediate in UP crystals
Class: transferase
Keywords: Oxocarbenium Ion, Glycal, Pyrimidine Salvage, Uridine Phosphorylase, Cytoplasm, Glycosyltransferase, Transferase
Deposited on 2009-11-30, released 2010-04-28
The last revision prior to the SCOPe 2.05 freeze date was dated 2010-05-05, with a file datestamp of 2010-04-30.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.175
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Escherichia coli [TaxId:83333]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3kvva_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Escherichia coli [TaxId:83333]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3kvvb_
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Escherichia coli [TaxId:83333]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3kvvc_
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Escherichia coli [TaxId:83333]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3kvvd_
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: Escherichia coli [TaxId:83333]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3kvve_
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: Escherichia coli [TaxId:83333]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3kvvf_
  • Heterogens: URF, SO4, R2B, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3kvvA (A:)
msksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgk
pvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvvA (A:)
sdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpvi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
aplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqtmkqteshavkivveaar
rll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3kvvB (B:)
msksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgk
pvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvvB (B:)
ksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpv
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
faplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqmkqteshavkivveaar
rll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3kvvC (C:)
msksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgk
pvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvvC (C:)
sdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpvi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
aplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqkqteshavkivveaarrl
l

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3kvvD (D:)
msksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgk
pvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvvD (D:)
sdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpvi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
aplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqqteshavkivveaarrll

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3kvvE (E:)
msksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgk
pvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvvE (E:)
ksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpv
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
faplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqnaetmkqteshavkivv
eaarrll

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3kvvF (F:)
msksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgk
pvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvvF (F:)
sdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpvi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
aplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqeshavkivveaarrll