PDB entry 3kvb

View 3kvb on RCSB PDB site
Description: Structure of KIAA1718 Jumonji domain in complex with N-oxalylglycine
Class: h3k4me3 binding protein, transferase
Keywords: Jumonji domain lysine demethylase, Metal-binding, Iron, Nickel ion
Deposited on 2009-11-29, released 2009-12-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-02-09, with a file datestamp of 2010-02-05.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: 0.216
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: JmjC domain-containing histone demethylation protein 1D
    Species: Homo sapiens [TaxId:9606]
    Gene: JHDM1D, KIAA1718
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3kvba_
  • Heterogens: NI, OXY, OGA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3kvbA (A:)
slmkkrrnwhrhdyteiddgskpvqagtrtfikelrsrvfpsadeiiikmhgsqltqryl
ekhgfdvpimvpklddlglrlpsptfsvmdveryvggdkvidvidvarqadskmtlhnyv
kyfmnpnrpkvlnvislefsdtkmselvevpdiakklswvenywpddsvfpkpfvqkycl
mgvqdsytdfhidfggtsvwyhvlwgekifylikptdenlaryeswsssvtqsevffgdk
vdkcykcvvkqghtlfvptgwihavltsqdcmafggnflhnlnigmqlrcyemekrlktp
dlfkfpffeaicwfvaknlletlkelredgfqpqtylvqgvkalhtalklwmkkelvseh
afeipdnvrpghlikelskviraieeengkpvksqgi

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvbA (A:)
pvqagtrtfikelrsrvfpsadeiiikmhgsqltqrylekhgfdvpimvpklddlglrlp
sptfsvmdveryvggdkvidvidvarqadskmtlhnyvkyfmnpnrpkvlnvislefsdt
kmselvevpdiakklswvenywpddsvfpkpfvqkyclmgvqdsytdfhidfggtsvwyh
vlwgekifylikptdenlaryeswsssvtqsevffgdkvdkcykcvvkqghtlfvptgwi
havltsqdcmafggnflhnlnigmqlrcyemekrlktpdlfkfpffeaicwfvaknllet
lkelredgfqpqtylvqgvkalhtalklwmkkelvsehafeipdnvrpghlikelskvir
aieeen