PDB entry 3kpo

View 3kpo on RCSB PDB site
Description: Crystal Structure of HLA B*4403 in complex with EEYLKAWTF, a mimotope
Class: immune system
Keywords: HLA B*4403, allorecognition, TCR recognition, mimotope peptide, Immune response, MHC I, Membrane, Transmembrane, IMMUNE SYSTEM
Deposited on 2009-11-16, released 2009-12-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.203
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-B, DAMA-387C9.2-001
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3kpoa1, d3kpoa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
    Domains in SCOPe 2.07: d3kpob1, d3kpob2
  • Chain 'C':
    Compound: EEYLKAWTF, mimotope peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 3KPO (0-8)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3kpoA (A:)
    gshsmryfytamsrpgrgeprfitvgyvddtlfvrfdsdatsprkeprapwieqegpeyw
    dretqisktntqtyrenlrtalryynqseagshiiqrmygcdvgpdgrllrgydqdaydg
    kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcveslrrylengketlq
    radppkthvthhpisdhevtlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3kpoB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.