PDB entry 3ko9

View 3ko9 on RCSB PDB site
Description: DTD from Plasmodium falciparum in complex with D-Arginine
Class: hydrolase
Keywords: DTD, DEACYLASE, D-ARGININE, Hydrolase
Deposited on 2009-11-13, released 2009-12-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ko9a_
  • Chain 'B':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ko9b_
  • Chain 'C':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ko9c_
  • Chain 'D':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ko9d_
  • Chain 'E':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ko9e_
  • Chain 'F':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ko9f_
  • Heterogens: DAR

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ko9A (A:)
    mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
    nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
    defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ko9A (A:)
    mrvviqrvkgailsvrleiiseiknglicflgihkndtwedalyiirkclnlrlwnndnk
    twdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqyndd
    kikigkfgnymnidvtndgpvtiyidthd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ko9B (B:)
    mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
    nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
    defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ko9B (B:)
    mrvviqrvkgailsvreleiiseiknglicflgihkndtwedalyiirkclnlrlwnndn
    ktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqynd
    dkikigkfgnymnidvtndgpvtiyidthdi
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ko9C (C:)
    mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
    nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
    defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ko9C (C:)
    mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
    nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
    defkkqynddkikigkfgnymnidvtndgpvtiyidthd
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ko9D (D:)
    mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
    nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
    defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ko9D (D:)
    mrvviqrvkgailsvrkeleiiseiknglicflgihkndtwedalyiirkclnlrlwnnd
    nktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqyn
    ddkikigkfgnymnidvtndgpvtiyidthd
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3ko9E (E:)
    mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
    nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
    defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ko9E (E:)
    mrvviqrvkgailsvrleiiseiknglicflgihkndtwedalyiirkclnlrlwnndnk
    twdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqyndd
    kikigkfgnymnidvtndgpvtiyidthdi
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3ko9F (F:)
    mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
    nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
    defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ko9F (F:)
    mrvviqrvkgailsvreleiiseiknglicflgihkndtwedalyiirkclnlrlwnndn
    ktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqynd
    dkikigkfgnymnidvtndgpvtiyidthd