PDB entry 3kmd
View 3kmd on RCSB PDB site
Description: Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer
Class: DNA binding protein/DNA
Keywords: p53 core domain, protein-DNA interaction, self assembled tetramer, Activator, Apoptosis, Cell cycle, Disease mutation, DNA-binding, Endoplasmic reticulum, Glycoprotein, Host-virus interaction, Isopeptide bond, Li-Fraumeni syndrome, Metal-binding, Methylation, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Tumor suppressor, DNA BINDING PROTEIN-DNA complex
Deposited on
2009-11-10, released
2010-02-23
The last revision prior to the SCOPe 2.05 freeze date was dated
2012-03-21, with a file datestamp of
2012-03-16.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.217
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Cellular tumor antigen p53
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3kmda_ - Chain 'B':
Compound: Cellular tumor antigen p53
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3kmdb_ - Chain 'C':
Compound: Cellular tumor antigen p53
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3kmdc_ - Chain 'D':
Compound: Cellular tumor antigen p53
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3kmdd_ - Chain 'E':
Compound: 5'-d(*gp*gp*gp*cp*ap*tp*gp*cp*cp*tp*ap*gp*gp*cp*ap*tp*gp*cp*c)-3'
- Chain 'F':
Compound: 5'-d(*gp*gp*gp*cp*ap*tp*gp*cp*cp*tp*ap*gp*gp*cp*ap*tp*gp*cp*c)-3'
- Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3kmdA (A:)
plsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstp
ppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrnt
frhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfe
vrvcacpgrdrrteeenlrk
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3kmdB (B:)
plsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstp
ppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrnt
frhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfe
vrvcacpgrdrrteeenlrk
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3kmdC (C:)
plsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstp
ppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrnt
frhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfe
vrvcacpgrdrrteeenlrk
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3kmdD (D:)
plsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstp
ppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrnt
frhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfe
vrvcacpgrdrrteeenlrk
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.