PDB entry 3kks

View 3kks on RCSB PDB site
Description: Crystal structure of catalytic core domain of BIV integrase in crystal form II
Class: DNA binding protein
Keywords: beta-strands flanked by alpha-helices, DNA BINDING PROTEIN
Deposited on 2009-11-06, released 2010-09-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.239
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: integrase
    Species: Bovine immunodeficiency virus [TaxId:417296]
    Gene: gag-pol
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19560 (3-End)
      • expression tag (0-2)
    Domains in SCOPe 2.07: d3kksa1, d3kksa2
  • Chain 'B':
    Compound: integrase
    Species: Bovine immunodeficiency virus [TaxId:417296]
    Gene: gag-pol
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19560 (3-151)
      • expression tag (0-2)
    Domains in SCOPe 2.07: d3kksb1, d3kksb2
  • Heterogens: ACT, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3kksA (A:)
gshlwqmdnthwnktiiwvavetnsglveaqvipeetalqvalcilqliqrytvlhlhsd
ngpcftahrienlckylgitkttgipynpqsqgvverahrdlkdrlaayqgdcetveaal
slalvslnkkrggigghtpyeiylesehtkyq

    Sequence, based on observed residues (ATOM records): (download) 
    >3kksA (A:)
gshlwqmdnthwnktiiwvavetnsglveaqvipeetalqvalcilqliqrytvlhlhsd
ngpcftahrienlckylgitkttgipynpqsqgvverahrdlkdrlaayqgdcetveaal
slalvslnkkrggigghtpyeiylesehtk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3kksB (B:)
gshlwqmdnthwnktiiwvavetnsglveaqvipeetalqvalcilqliqrytvlhlhsd
ngpcftahrienlckylgitkttgipynpqsqgvverahrdlkdrlaayqgdcetveaal
slalvslnkkrggigghtpyeiylesehtkyq