PDB entry 3kk2

View 3kk2 on RCSB PDB site
Description: HIV-1 reverse transcriptase-DNA complex with dATP bound in the nucleotide binding site
Class: transferase/DNA
Keywords: HIV, reverse transcriptase, protein-DNA complex, TRANSFERASE-DNA complex
Deposited on 2009-11-04, released 2010-03-23
The last revision prior to the SCOPe 2.01 freeze date was dated 2010-08-11, with a file datestamp of 2010-08-06.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.201
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Reverse transcriptase P66 SUBUNIT
    Species: Human immunodeficiency virus type 1 [TaxId:11706]
    Gene: gag-pol
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04585 (0-End)
      • engineered (257)
      • engineered (279)
  • Chain 'B':
    Compound: Reverse transcriptase P51 SUBUNIT
    Species: Human immunodeficiency virus type 1 [TaxId:11706]
    Gene: gag-pol
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04585
      • engineered (291)
    Domains in SCOPe 2.01: d3kk2b_
  • Chain 'P':
    Compound: 5'-d(*ap*cp*a*gp*tp*cp*cp*cp*tp*gp*tp*tp*cp*gp*gp*gp*cp*gp*cp*cp*(doc))-3'
  • Chain 'T':
    Compound: 5'-d(*a*tp*gp*gp*tp*gp*gp*gp*cp*gp*cp*cp*cp*gp*ap*ap*cp*ap*gp*gp*gp*ap*cp*tp*gp*tp*g)-3'
  • Heterogens: SO4, MG, DTP, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3kk2B (B:)
mgsshhhhhhsspispietvpvklkpgmdgpkvkqwplteekikalveictemekegkis
kigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtv
ldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkil
epfrkqnpdiviyqymddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppfl
wmgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtka
lteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfkn
lktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqa
twipewefvntpplvklwyqlekepivgaetf

    Sequence, based on observed residues (ATOM records): (download) 
    >3kk2B (B:)
pietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfai
kkkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdayfsvplded
frkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfrkqnpdiviyqy
mddlyvgsdleigqhrtkieelrqhllrwglttmgyelhpdkwtvqpivlpekdswtvnd
iqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhg
vyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkit
tesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqle

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.