PDB entry 3khb

View 3khb on RCSB PDB site
Description: Crystal structure of Escherichia coli AlkB with Co(II) and 2-OG
Class: oxidoreductase
Keywords: oxidoreductase, AlkB, 2-oxoglutarate, DNA alkylation repair, Dioxygenase, DNA damage, DNA repair, Iron, Metal-binding
Deposited on 2009-10-30, released 2010-01-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.234
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-ketoglutarate-dependent dioxygenase AlkB
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: aidD, alkB, b2212, JW2200
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3khba_
  • Chain 'B':
    Compound: Alpha-ketoglutarate-dependent dioxygenase AlkB
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: aidD, alkB, b2212, JW2200
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3khbb_
  • Heterogens: CO, AKG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3khbA (A:)
gphmldlfadaepwqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytm
svamtncghlgwtthrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdac
linryapgaklslhqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvv
wggesrlfyhgiqplkagfhpltidcrynltfrqagkke

    Sequence, based on observed residues (ATOM records): (download) 
    >3khbA (A:)
qeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtt
hrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslh
qdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqp
lkagfhpltidcrynltfrqagk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3khbB (B:)
gphmldlfadaepwqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytm
svamtncghlgwtthrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdac
linryapgaklslhqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvv
wggesrlfyhgiqplkagfhpltidcrynltfrqagkke

    Sequence, based on observed residues (ATOM records): (download) 
    >3khbB (B:)
epwqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlg
wtthrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgakl
slhqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhg
iqplkagfhpltidcrynltfrqagk