PDB entry 3kd6

View 3kd6 on RCSB PDB site
Description: Crystal Structure of Nucleoside Kinase from Chlorobium tepidum in Complex with AMP
Class: transferase
Keywords: KINASE, PFKB, NUCLEOSIDE KINASE, AMP, PSI-II, NYSGXRC, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, TRANSFERASE
Deposited on 2009-10-22, released 2009-11-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 1.88 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Carbohydrate kinase, PfkB family
    Species: Chlorobaculum tepidum [TaxId:1097]
    Gene: CT0976
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8KDR9 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3kd6a1, d3kd6a2
  • Chain 'B':
    Compound: Carbohydrate kinase, PfkB family
    Species: Chlorobaculum tepidum [TaxId:1097]
    Gene: CT0976
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3kd6b_
  • Heterogens: AMP, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3kd6A (A:)
mslsllvigslafddietpfgrsdntlggsstyialsasyftdepirmvgvvgsdfgkeh
fdllhaknidtrgiqviedgktfrwagryhydmntrdtldtqlnvfaefdphvpqyyrds
kfvclgnidpelqlkvldqiddpklvvcdtmnfwiegkpeelkkvlarvdvfivndsear
llsgdpnlvktariiremgpktliikkgehgallftdngifaapafplesiydptgagdt
faggfighlarcgntseaemrkavlygsamasfcveqfgpyryndldllevddryqsfle
lsrieeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kd6A (A:)
lsllvigslafddietpfgrsdntlggsstyialsasyftdepirmvgvvgsdfgkehfd
llhaknidtrgiqviedgktfrwagryhydmntrdtldtqlnvfaefdphvpqyyrdskf
vclgnidpelqlkvldqiddpklvvcdtmnfwiegkpeelkkvlarvdvfivndsearll
sgdpnlvktariiremgpktliikkgehgallftdngifaapafplesiydptgagdtfa
ggfighlarcgntseaemrkavlygsamasfcveqfgpyryndldllevddryqsflels

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3kd6B (B:)
mslsllvigslafddietpfgrsdntlggsstyialsasyftdepirmvgvvgsdfgkeh
fdllhaknidtrgiqviedgktfrwagryhydmntrdtldtqlnvfaefdphvpqyyrds
kfvclgnidpelqlkvldqiddpklvvcdtmnfwiegkpeelkkvlarvdvfivndsear
llsgdpnlvktariiremgpktliikkgehgallftdngifaapafplesiydptgagdt
faggfighlarcgntseaemrkavlygsamasfcveqfgpyryndldllevddryqsfle
lsrieeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kd6B (B:)
sllvigslafddietpfgrsdntlggsstyialsasyftdepirmvgvvgsdfgkehfdl
lhaknidtrgiqviedgktfrwagryhydmntrdtldtqlnvfaefdphvpqyyrdskfv
clgnidpelqlkvldqiddpklvvcdtmnfwiegkpeelkkvlarvdvfivndsearlls
gdpnlvktariiremgpktliikkgehgallftdngifaapafplesiydptgagdtfag
gfighlarcgntseaemrkavlygsamasfcveqfgpyryndldllevddryqsflel