PDB entry 3kcm
View 3kcm on RCSB PDB site
Description: The crystal structure of thioredoxin protein from Geobacter metallireducens
Class: oxidoreductase
Keywords: SGX, thioredoxin protein, PSI, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, Redox-active center, OXIDOREDUCTASE
Deposited on
2009-10-21, released
2009-11-10
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.217
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Thioredoxin family protein
Species: Geobacter metallireducens GS-15 [TaxId:269799]
Gene: 11211k2, Gmet_2452
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3kcma1, d3kcma2 - Chain 'B':
Compound: Thioredoxin family protein
Species: Geobacter metallireducens GS-15 [TaxId:269799]
Gene: 11211k2, Gmet_2452
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3kcmb1, d3kcmb2 - Chain 'C':
Compound: Thioredoxin family protein
Species: Geobacter metallireducens GS-15 [TaxId:269799]
Gene: 11211k2, Gmet_2452
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3kcmc_ - Chain 'D':
Compound: Thioredoxin family protein
Species: Geobacter metallireducens GS-15 [TaxId:269799]
Gene: 11211k2, Gmet_2452
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3kcmd_ - Chain 'E':
Compound: Thioredoxin family protein
Species: Geobacter metallireducens GS-15 [TaxId:269799]
Gene: 11211k2, Gmet_2452
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3kcme_ - Chain 'F':
Compound: Thioredoxin family protein
Species: Geobacter metallireducens GS-15 [TaxId:269799]
Gene: 11211k2, Gmet_2452
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3kcmf_ - Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3kcmA (A:)
msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
kkvvgamewdhpeviaflnnelskareghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3kcmA (A:)
leenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpf
rmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkk
vvgamewdhpeviaflnne
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3kcmB (B:)
msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
kkvvgamewdhpeviaflnnelskareghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3kcmB (B:)
leenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpf
rmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkk
vvgamewdhpeviaflnnels
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3kcmC (C:)
msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
kkvvgamewdhpeviaflnnelskareghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3kcmC (C:)
eenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpfr
mlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkkv
vgamewdhpeviaflnnel
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3kcmD (D:)
msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
kkvvgamewdhpeviaflnnelskareghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3kcmD (D:)
enpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpfrm
lcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkkvv
gamewdhpeviaflnnelskar
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3kcmE (E:)
msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
kkvvgamewdhpeviaflnnelskareghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3kcmE (E:)
enpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpfrm
lcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkkvv
gamewdhpeviaflnnelska
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3kcmF (F:)
msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
kkvvgamewdhpeviaflnnelskareghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3kcmF (F:)
enpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpfrm
lcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkkvv
gamewdhpeviaflnnel