PDB entry 3kcm

View 3kcm on RCSB PDB site
Description: The crystal structure of thioredoxin protein from Geobacter metallireducens
Class: oxidoreductase
Keywords: SGX, thioredoxin protein, PSI, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, Redox-active center, OXIDOREDUCTASE
Deposited on 2009-10-21, released 2009-11-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.217
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Thioredoxin family protein
    Species: Geobacter metallireducens GS-15 [TaxId:269799]
    Gene: 11211k2, Gmet_2452
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q39SU7 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.07: d3kcma1, d3kcma2
  • Chain 'B':
    Compound: Thioredoxin family protein
    Species: Geobacter metallireducens GS-15 [TaxId:269799]
    Gene: 11211k2, Gmet_2452
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q39SU7 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.07: d3kcmb1, d3kcmb2
  • Chain 'C':
    Compound: Thioredoxin family protein
    Species: Geobacter metallireducens GS-15 [TaxId:269799]
    Gene: 11211k2, Gmet_2452
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3kcmc_
  • Chain 'D':
    Compound: Thioredoxin family protein
    Species: Geobacter metallireducens GS-15 [TaxId:269799]
    Gene: 11211k2, Gmet_2452
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3kcmd_
  • Chain 'E':
    Compound: Thioredoxin family protein
    Species: Geobacter metallireducens GS-15 [TaxId:269799]
    Gene: 11211k2, Gmet_2452
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3kcme_
  • Chain 'F':
    Compound: Thioredoxin family protein
    Species: Geobacter metallireducens GS-15 [TaxId:269799]
    Gene: 11211k2, Gmet_2452
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3kcmf_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3kcmA (A:)
    msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
    pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
    kkvvgamewdhpeviaflnnelskareghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3kcmA (A:)
    leenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpf
    rmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkk
    vvgamewdhpeviaflnne
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3kcmB (B:)
    msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
    pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
    kkvvgamewdhpeviaflnnelskareghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3kcmB (B:)
    leenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpf
    rmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkk
    vvgamewdhpeviaflnnels
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3kcmC (C:)
    msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
    pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
    kkvvgamewdhpeviaflnnelskareghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3kcmC (C:)
    eenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpfr
    mlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkkv
    vgamewdhpeviaflnnel
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3kcmD (D:)
    msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
    pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
    kkvvgamewdhpeviaflnnelskareghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3kcmD (D:)
    enpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpfrm
    lcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkkvv
    gamewdhpeviaflnnelskar
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3kcmE (E:)
    msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
    pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
    kkvvgamewdhpeviaflnnelskareghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3kcmE (E:)
    enpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpfrm
    lcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkkvv
    gamewdhpeviaflnnelska
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3kcmF (F:)
    msleenpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagk
    pfrmlcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvil
    kkvvgamewdhpeviaflnnelskareghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3kcmF (F:)
    enpapdftlntlngevvklsdlkgqvvivnfwatwcppcreeipsmmrlnaamagkpfrm
    lcvsideggkvaveeffrktgftlpvlldadkrvgklygttgvpetfvidrhgvilkkvv
    gamewdhpeviaflnnel