PDB entry 3k9p

View 3k9p on RCSB PDB site
Description: The crystal structure of E2-25K and ubiquitin complex
Class: ligase/signaling protein
Keywords: E2-25K, ubiquitin, complex structure, ATP-binding, Isopeptide bond, Ligase, Nucleotide-binding, Ubl conjugation pathway, Nucleus, Phosphoprotein, LIGASE-SIGNALING PROTEIN complex
Deposited on 2009-10-16, released 2010-09-08
The last revision prior to the SCOPe 2.03 freeze date was dated 2010-11-17, with a file datestamp of 2010-11-12.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.232
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2 K
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2K, HIP2, LIG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3k9pa1, d3k9pa2
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3k9pb_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3k9pA (A:)
    gshmasmtggqqmgrgsmaniavqrikrefkevlkseetsknqikvdlvdenftelrgei
    agppdtpyeggryqleikipetypfnppkvrfitkiwhpnissvtgaicldilkdqwaaa
    mtlrtvllslqallaaaepddpqdavvanqykqnpemfkqtarlwahvyagapvsspeyt
    kkienlcamgfdrnavivalsskswdvetatelllsn
    

    Sequence, based on observed residues (ATOM records): (download)
    >3k9pA (A:)
    maniavqrikrefkevlkseetsknqikvdlvdenftelrgeiagppdtpyeggryqlei
    kipetypfnppkvrfitkiwhpnissvtgaicldilkdqwaaamtlrtvllslqallaaa
    epddpqdavvanqykqnpemfkqtarlwahvyagapvsspeytkkienlcamgfdrnavi
    valsskswdvetatellls
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3k9pB (B:)
    gshmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
    dyniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3k9pB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlr