PDB entry 3k9e

View 3k9e on RCSB PDB site
Description: Crystal structure of a putative Ribokinase II (Apo Form) from E.coli
Class: transferase
Keywords: TRANSFERASE, KINASE, SAD, RIBOSE, D-RIBOSE METABOLIC PROCESS, RIBOKINASE, PFKB FAMILY, 11206G, PSI-II, NYSGXRC, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics
Deposited on 2009-10-15, released 2009-11-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative Ribokinase II
    Species: ESCHERICHIA COLI [TaxId:217992]
    Gene: 1040397, c4014
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3k9ea_
  • Chain 'B':
    Compound: putative Ribokinase II
    Species: ESCHERICHIA COLI [TaxId:217992]
    Gene: 1040397, c4014
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8FD38 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3k9eb1, d3k9eb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3k9eA (A:)
    mslskvftigeilveimaskigqpfdqpgiwngpypsgapaifidqvtrlgvpcgiiscv
    gndgfgdinihrlaadgvdirgisvlpleatgsafvtyhnsgdrdfifniknaacgklsa
    qhvdenilkdcthfhimgsslfsfhmvdavkkavtivkanggvisfdpnirkemldipem
    rdalhfvleltdiympsegevlllsphstperaiagfleegvkevivkrgnqgasyysan
    eqfhvesypveevdptgagdcfggawiacrqlgfdahralqyanacgalavtrrgpmegt
    srlmeietfiqrhdmsireaaqeghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3k9eA (A:)
    skvftigeilveimaskigqpfdqpgiwngpypsgapaifidqvtrlgvpcgiiscvgnd
    gfgdinihrlaadgvdirgisvlpleatgsafvtyhnrdfifniknaacgklsaqhvden
    ilkdcthfhimgsslfsfhmvdavkkavtivkanggvisfdpnirkemldipemrdalhf
    vleltdiympsegevlllsphstperaiagfleegvkevivkrgnqgasyysaneqfhve
    sypveevdptgagdcfggawiacrqlgfdahralqyanacgalavtrrgpmegtsrlmei
    etfiqrh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3k9eB (B:)
    mslskvftigeilveimaskigqpfdqpgiwngpypsgapaifidqvtrlgvpcgiiscv
    gndgfgdinihrlaadgvdirgisvlpleatgsafvtyhnsgdrdfifniknaacgklsa
    qhvdenilkdcthfhimgsslfsfhmvdavkkavtivkanggvisfdpnirkemldipem
    rdalhfvleltdiympsegevlllsphstperaiagfleegvkevivkrgnqgasyysan
    eqfhvesypveevdptgagdcfggawiacrqlgfdahralqyanacgalavtrrgpmegt
    srlmeietfiqrhdmsireaaqeghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3k9eB (B:)
    lskvftigeilveimaskigqpfdqpgiwngpypsgapaifidqvtrlgvpcgiiscvgn
    dgfgdinihrlaadgvdirgisvlpleatgsafvtyhnsgdrdfifniknaacgklsaqh
    vdenilkdcthfhimgsslfsfhmvdavkkavtivkanggvisfdpnirkemldipemrd
    alhfvleltdiympsegevlllsphstperaiagfleegvkevivkrgnqgasyysaneq
    fhvesypveevdptgagdcfggawiacrqlgfdahralqyanacgalavtrrgpmegtsr
    lmeietfiqrh