PDB entry 3k8d

View 3k8d on RCSB PDB site
Description: Crystal structure of E. coli lipopolysaccharide specific CMP-KDO synthetase in complex with CTP and 2-deoxy-Kdo
Class: transferase
Keywords: KdsB synthetase KDO complex, Lipopolysaccharide biosynthesis, Magnesium, Nucleotidyltransferase, Transferase
Deposited on 2009-10-14, released 2009-11-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-deoxy-manno-octulosonate cytidylyltransferase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3k8da_
  • Chain 'B':
    Compound: 3-deoxy-manno-octulosonate cytidylyltransferase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3k8db_
  • Chain 'C':
    Compound: 3-deoxy-manno-octulosonate cytidylyltransferase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3k8dc_
  • Chain 'D':
    Compound: 3-deoxy-manno-octulosonate cytidylyltransferase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3k8dd_
  • Heterogens: MG, KDO, CTP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3k8dA (A:)
hhhhhhssglvprgshmsfvviiparyastrlpgkplvdingkpmivhvleraresgaer
iivatdhedvaraveaaggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmi
patiirqvadnlaqrqvgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdr
drfaegletvgdnflrhlgiygyragfirryvnwqpsplehiemleqlrvlwygekihva
vaqevpgtgvdtpedlervraemr

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8dA (A:)
sfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaraveaa
ggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqv
gmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflrh
lgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedle
rvraem

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3k8dB (B:)
hhhhhhssglvprgshmsfvviiparyastrlpgkplvdingkpmivhvleraresgaer
iivatdhedvaraveaaggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmi
patiirqvadnlaqrqvgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdr
drfaegletvgdnflrhlgiygyragfirryvnwqpsplehiemleqlrvlwygekihva
vaqevpgtgvdtpedlervraemr

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8dB (B:)
sfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaraveaa
ggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqv
gmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflrh
lgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedle
rvraem

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3k8dC (C:)
hhhhhhssglvprgshmsfvviiparyastrlpgkplvdingkpmivhvleraresgaer
iivatdhedvaraveaaggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmi
patiirqvadnlaqrqvgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdr
drfaegletvgdnflrhlgiygyragfirryvnwqpsplehiemleqlrvlwygekihva
vaqevpgtgvdtpedlervraemr

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8dC (C:)
sfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaraveaa
ggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqv
gmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflrh
lgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedle
rvraem

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3k8dD (D:)
hhhhhhssglvprgshmsfvviiparyastrlpgkplvdingkpmivhvleraresgaer
iivatdhedvaraveaaggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmi
patiirqvadnlaqrqvgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdr
drfaegletvgdnflrhlgiygyragfirryvnwqpsplehiemleqlrvlwygekihva
vaqevpgtgvdtpedlervraemr

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8dD (D:)
sfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaraveaa
ggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqv
gmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflrh
lgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedle
rvraem