PDB entry 3k5o

View 3k5o on RCSB PDB site
Description: Crystal structure of E.coli Pol II
Class: transferase
Keywords: Apo, DNA damage, DNA repair, DNA-binding, DNA-directed DNA polymerase, Nucleotidyltransferase, SOS response, Transferase
Deposited on 2009-10-07, released 2010-02-02
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.218
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase II
    Species: Escherichia coli [TaxId:83333]
    Gene: b0060, dinA, JW0059, polB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21189 (Start-785)
      • engineered (337)
    Domains in SCOPe 2.03: d3k5oa1, d3k5oa2
  • Chain 'B':
    Compound: DNA polymerase II
    Species: Escherichia coli [TaxId:83333]
    Gene: b0060, dinA, JW0059, polB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21189 (Start-785)
      • engineered (337)
    Domains in SCOPe 2.03: d3k5ob1, d3k5ob2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3k5oA (A:)
gphmaqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhil
qgeqgfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylme
rfitspvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqri
vymlgpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkha
eryrlplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletva
qellgegksidnpwdrmdeidrrfaedkpalatynlkncelvtqifhkteimpfllerat
vnglpvdrhggsvaafghlyfprmhragyvapnlgevpphaspggyvmdsrpglydsvlv
ldykslypsiirtflidpvglvegmaqpdpehstegfldawfsrekhclpeivtniwhgr
deakrqgnkplsqalkiimnafygvlgttacrffdprlassitmrghqimrqtkalieaq
gydviygdtdstfvwlkgahseeeaakigralvqhvnawwaetlqkqrltsaleleyeth
fcrflmptirgadtgskkryagliqegdkqrmvfkgletvrtdwtplaqqfqqelylrif
rnepyqeyvretidklmageldarlvyrkrlrrplseyqrnvpphvraarladeenqkrg
rplqyqnrgtikyvwttngpepldyqrspldyehyltrqlqpvaegilpfiednfatlmt
gqlglf

    Sequence, based on observed residues (ATOM records): (download) 
    >3k5oA (A:)
aqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqgeq
gfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfit
spvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivyml
gpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaeryr
lplrlgrdnselewrfaqakgrliidgiealksafwnfssfsletvaqellgenpwdrmd
eidrrfaedkpalatynlkncelvtqifhkteimpflleratvnglpvdrhggsvaafgh
lyfprmhragyvapnlgevpphaspggyvmdsrpglydsvlvldykslypsiirtflidp
vglvegmaqpdpehstegfldawfsrekhclpeivtniwhgrdeakrqgnkplsqalkii
mnafygvlgttacrffdprlassitmrghqimrqtkalieaqgydviygdtdstfvwlkg
ahseeeaakigralvqhvnawwaetlqkqrltsaleleyethfcrflmptirgkryagli
qegdkqrmvfkgletwtplaqqfqqelylrifrnepyqeyvretidklmageldarlvyr
krlrrplseyqrnvpphvraarladeenqkrgrplqyqnrgtikyvwttngpepldyqrs
pldyehyltrqlqpvaegilpfiednfatlmtgqlglf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3k5oB (B:)
gphmaqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhil
qgeqgfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylme
rfitspvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqri
vymlgpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkha
eryrlplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletva
qellgegksidnpwdrmdeidrrfaedkpalatynlkncelvtqifhkteimpfllerat
vnglpvdrhggsvaafghlyfprmhragyvapnlgevpphaspggyvmdsrpglydsvlv
ldykslypsiirtflidpvglvegmaqpdpehstegfldawfsrekhclpeivtniwhgr
deakrqgnkplsqalkiimnafygvlgttacrffdprlassitmrghqimrqtkalieaq
gydviygdtdstfvwlkgahseeeaakigralvqhvnawwaetlqkqrltsaleleyeth
fcrflmptirgadtgskkryagliqegdkqrmvfkgletvrtdwtplaqqfqqelylrif
rnepyqeyvretidklmageldarlvyrkrlrrplseyqrnvpphvraarladeenqkrg
rplqyqnrgtikyvwttngpepldyqrspldyehyltrqlqpvaegilpfiednfatlmt
gqlglf

    Sequence, based on observed residues (ATOM records): (download) 
    >3k5oB (B:)
aqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqgeq
gfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfit
spvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivyml
gpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaeryr
lplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletvaqell
gegdeidrrfaedkpalatynlkncelvtqifhkteimpflleratvnglpvdrhggsva
afghlyfprmhragyvapnlgevpphaspggyvmdsrpglydsvlvldykslypsiirtf
lidpvglvegmaqpdpehstegfldawfsrekhclpeivtniwhgrdeakrqgnkplsqa
lkiimnafygvlgttacrffdprlassitmrghqimrqtkalieaqgydviygdtdstfv
wlkgahseeeaakigralvqhvnawwaetlqkqrltsaleleyethfcrflmptiyagli
qegdkqrmvfkwtplaqqfqqelylrifrnepyqeyvretidklmageldarlvyrkrlr
rplseyqrnvpphvraarladeerpyqtikyvwttngpepldyqrspldyehyltrqlqp
vaegilpfiednfatlmtgqlglf