PDB entry 3k1k

View 3k1k on RCSB PDB site
Description: Green fluorescent protein bound to minimizer nanobody
Class: luminescent protein/immune system
Keywords: nanobody, ANTIBODY-COMPLEX, CHROMOPHORE, LUMINESCENCE, PHOTOPROTEIN, LUMINESCENT PROTEIN-IMMUNE SYSTEM COMPLEX
Deposited on 2009-09-28, released 2009-12-08
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-09-18, with a file datestamp of 2013-09-13.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.215
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • chromophore (65)
      • engineered (79)
      • engineered (98)
      • engineered (152)
      • engineered (162)
    Domains in SCOPe 2.04: d3k1ka_
  • Chain 'B':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • chromophore (65)
      • engineered (79)
      • engineered (98)
      • engineered (152)
      • engineered (162)
    Domains in SCOPe 2.04: d3k1kb_
  • Chain 'C':
    Compound: Enhancer
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3K1K
    Domains in SCOPe 2.04: d3k1kc_
  • Chain 'D':
    Compound: Enhancer
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3K1K
    Domains in SCOPe 2.04: d3k1kd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3k1kA (A:)
mgkgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
vttfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlv
nrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqlad
hyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagithgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >3k1kA (A:)
kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
tfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlvnr
ielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqladhy
qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3k1kB (B:)
mgkgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
vttfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlv
nrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqlad
hyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagithgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >3k1kB (B:)
kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
tfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlvnr
ielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqladhy
qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3k1kC (C:)
maqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrs
syedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsshhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3k1kC (C:)
qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3k1kD (D:)
maqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrs
syedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsshhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3k1kD (D:)
qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvss