PDB entry 3k0j
View 3k0j on RCSB PDB site
Description: Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module
Class: RNA/RNA binding protein
Keywords: riboswitch, RNA, thi-box, ThiM, U1A protein, Acetylation, mRNA processing, mRNA splicing, Nucleus, Phosphoprotein, Ribonucleoprotein, RNA-binding, Spliceosome, RNA/RNA BINDING PROTEIN COMPLEX
Deposited on
2009-09-24, released
2009-12-22
The last revision prior to the SCOPe 2.05 freeze date was dated
2010-01-12, with a file datestamp of
2010-01-08.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.197
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: U1 small nuclear ribonucleoprotein A
Species: Homo sapiens [TaxId:9606]
Gene: SNRPA, U1A protein
Database cross-references and differences (RAF-indexed):
- Uniprot P09012
- engineered (29)
- engineered (34)
Domains in SCOPe 2.05: d3k0ja_ - Chain 'B':
Compound: U1 small nuclear ribonucleoprotein A
Species: Homo sapiens [TaxId:9606]
Gene: SNRPA, U1A protein
Database cross-references and differences (RAF-indexed):
- Uniprot P09012
- engineered (29)
- engineered (34)
Domains in SCOPe 2.05: d3k0jb_ - Chain 'C':
Compound: U1 small nuclear ribonucleoprotein A
Species: Homo sapiens [TaxId:9606]
Gene: SNRPA, U1A protein
Database cross-references and differences (RAF-indexed):
- Uniprot P09012
- engineered (29)
- engineered (34)
Domains in SCOPe 2.05: d3k0jc_ - Chain 'D':
Compound: U1 small nuclear ribonucleoprotein A
Species: Homo sapiens [TaxId:9606]
Gene: SNRPA, U1A protein
Database cross-references and differences (RAF-indexed):
- Uniprot P09012
- engineered (29)
- engineered (34)
Domains in SCOPe 2.05: d3k0jd_ - Chain 'E':
Compound: RNA (87-mer)
- Chain 'F':
Compound: RNA (87-mer)
- Heterogens: TPP, MG
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3k0jA (A:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakm
Sequence, based on observed residues (ATOM records): (download)
>3k0jA (A:)
trpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevssa
tnalrsmqgfpfydkpmriqyaktdsdiiakm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3k0jB (B:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakm
Sequence, based on observed residues (ATOM records): (download)
>3k0jB (B:)
trpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevssa
tnalrsmqgfpfydkpmriqyaktdsdiiakm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3k0jC (C:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakm
Sequence, based on observed residues (ATOM records): (download)
>3k0jC (C:)
petrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevs
satnalrsmqgfpfydkpmriqyakt
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3k0jD (D:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakm
Sequence, based on observed residues (ATOM records): (download)
>3k0jD (D:)
trpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrsmrgqafvifkevssatn
alrsmqgfpfydkpmriqyakt
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.