PDB entry 3jy6

View 3jy6 on RCSB PDB site
Description: Crystal structure of LacI Transcriptional regulator from Lactobacillus brevis
Class: Transcription regulator
Keywords: NYSGXRC, PSI-II, transcriptional regulator, Lac I, Protein structure Initiative, 11238g, structural genomics, New York SGX Research Center for Structural Genomics, DNA-binding, Transcription, Transcription regulation, Transcription regulator
Deposited on 2009-09-21, released 2009-10-13
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.97 Å
R-factor: 0.247
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcriptional regulator, LacI family
    Species: Lactobacillus brevis [TaxId:387344]
    Gene: LVIS_0444
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03T70 (Start-267)
      • expression tag (268)
    Domains in SCOPe 2.04: d3jy6a_
  • Chain 'B':
    Compound: Transcriptional regulator, LacI family
    Species: Lactobacillus brevis [TaxId:387344]
    Gene: LVIS_0444
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3jy6b_
  • Chain 'C':
    Compound: Transcriptional regulator, LacI family
    Species: Lactobacillus brevis [TaxId:387344]
    Gene: LVIS_0444
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3jy6c_
  • Chain 'D':
    Compound: Transcriptional regulator, LacI family
    Species: Lactobacillus brevis [TaxId:387344]
    Gene: LVIS_0444
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03T70 (Start-267)
      • expression tag (268)
    Domains in SCOPe 2.04: d3jy6d_
  • Heterogens: CL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3jy6A (A:)
msltqsskliavivaniddyfstelfkgissilesrgyigvlfdanadierektllraig
srgfdglilqsfsnpqtvqeilhqqmpvvsvdremdacpwpqvvtdnfeaakaattafrq
qgyqhvvvltselelsrtrqeryrgilaaaqdvdvlevsessynhsevhqrltqlitqnd
qktvafalkerwlleffpnliisglidnqtvtatgfadtdfirrmepkltlitqnpflmg
assaeimlrqlagekvapekmvipaklqeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3jy6A (A:)
qsskliavivaniddyfstelfkgissilesrgyigvlfdanadierektllraigsrgf
dglilqsfsnpqtvqeilhqqmpvvsvdremdacpwpqvvtdnfeaakaattafrqqgyq
hvvvltselelsrtrqeryrgilaaaqdvdvlevsessynhsevhqrltqlitqndqktv
afalkerwlleffpnliisglidnqtvtatgfadtdfirrmkltlitqnpflmgassaei
mlrqlagekvapekmvipaklqe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3jy6B (B:)
msltqsskliavivaniddyfstelfkgissilesrgyigvlfdanadierektllraig
srgfdglilqsfsnpqtvqeilhqqmpvvsvdremdacpwpqvvtdnfeaakaattafrq
qgyqhvvvltselelsrtrqeryrgilaaaqdvdvlevsessynhsevhqrltqlitqnd
qktvafalkerwlleffpnliisglidnqtvtatgfadtdfirrmepkltlitqnpflmg
assaeimlrqlagekvapekmvipaklqeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3jy6B (B:)
kliavivaniddyfstelfkgissilesrgyigvlfdanadierektllraigsrgfdgl
ilqsfsnpqtvqeilhqqmpvvsvdremdacpwpqvvtdnfeaakaattafrqqgyqhvv
vltselelsrtrqeryrgilaaaqdvdvlevsessynhsevhqrltqlitqndqktvafa
lkerwlleffpnliisglidnqtvtatgfadtdfirrmkltlitqnpflmgassaeimlr
qlagekvapekmvipaklq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3jy6C (C:)
msltqsskliavivaniddyfstelfkgissilesrgyigvlfdanadierektllraig
srgfdglilqsfsnpqtvqeilhqqmpvvsvdremdacpwpqvvtdnfeaakaattafrq
qgyqhvvvltselelsrtrqeryrgilaaaqdvdvlevsessynhsevhqrltqlitqnd
qktvafalkerwlleffpnliisglidnqtvtatgfadtdfirrmepkltlitqnpflmg
assaeimlrqlagekvapekmvipaklqeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3jy6C (C:)
kliavivaniddyfstelfkgissilesrgyigvlfdanadierektllraigsrgfdgl
ilqsfsnpqtvqeilhqqmpvvsvdremdacpwpqvvtdnfeaakaattafqqgyqhvvv
ltselelsrtrqeryrgilaaaqdvdvlevsessynhsevhqrltqlitktvafalkerw
lleffpnliisglidnqtvtatgfadtdfirrmkltlitqnpflmgassaeimlrqlage
kvapekmvipaklq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3jy6D (D:)
msltqsskliavivaniddyfstelfkgissilesrgyigvlfdanadierektllraig
srgfdglilqsfsnpqtvqeilhqqmpvvsvdremdacpwpqvvtdnfeaakaattafrq
qgyqhvvvltselelsrtrqeryrgilaaaqdvdvlevsessynhsevhqrltqlitqnd
qktvafalkerwlleffpnliisglidnqtvtatgfadtdfirrmepkltlitqnpflmg
assaeimlrqlagekvapekmvipaklqeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3jy6D (D:)
kliavivaniddyfstelfkgissilesrgyigvlfdanadierektllraigsrgfdgl
ilqsfsnpqtvqeilhqqmpvvsvdremdacpwpqvvtdnfeaakaattafrqqgyqhvv
vltselelsrtrqeryrgilaaaqdvdvlevsessyhsevhqrltqlitqndqktvafal
kerwlleffpnliisglidnqtvtatgfadtdfirrmepkltlitqnpflmgassaeiml
rqlagekvapekmvipaklqe