PDB entry 3jvg
View 3jvg on RCSB PDB site
Description: Crystal Structure of chicken CD1-1
Class: immune system
Keywords: cd1, T-Cell, lipid, antigen, Transmembrane, Disulfide bond, Immune response, Immunoglobulin domain, MHC I, Polymorphism, Secreted, IMMUNE SYSTEM
Deposited on
2009-09-16, released
2010-02-09
The last revision prior to the SCOPe 2.05 freeze date was dated
2010-03-02, with a file datestamp of
2010-02-26.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.218
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein CD1A1 antigen
Species: Gallus gallus [TaxId:9031]
Gene: CD1A1, chicken cd1.1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3jvga1, d3jvga2 - Chain 'B':
Compound: T-cell surface glycoprotein CD1A1 antigen
Species: Gallus gallus [TaxId:9031]
Gene: CD1A1, chicken cd1.1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3jvgb1, d3jvgb2 - Chain 'C':
Compound: Beta-2-microglobulin
Species: Gallus gallus [TaxId:9031]
Gene: B2M, beta-2-microglobulin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3jvgc_ - Chain 'D':
Compound: Beta-2-microglobulin
Species: Gallus gallus [TaxId:9031]
Gene: B2M, beta-2-microglobulin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3jvgd_ - Heterogens: UNL, CL, NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3jvgA (A:)
epegshmlkllhfatfqnstsvlvgglgllgdvkmgsldsrtgniryyrpwlrpslpkgd
wdviessiksyvrdfsrlvqmyttvpypfvfqssigcelqsngtirtffdiayegqnflr
fnldagtwdqmqhnqlsakaehlmanastlneviqvllndtcvdilrlfiqagkadlerq
vppmavvfartagqaqlllvcrvtsfyprpiavtwlrdgrevppspalstgtvlpnadlt
yqlrstllvspqdghgyacrvqhcslgdrsllvpwhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3jvgA (A:)
shmlkllhfatfqnstsvlvgglgllgdvkmgsldsrtgniryyrpwlrpslpkgdwdvi
essiksyvrdfsrlvqmytvpypfvfqssigcelqsngtirtffdiayegqnflrfnlda
gtwdqmqhnqlsakaehlmanastlneviqvllndtcvdilrlfiqagkadlerqvppma
vvfartaqlllvcrvtsfyprpiavtwlrdgrevppspalstgtvlpnadltyqlrstll
vsphgyacrvqhcslgrsllvpwh
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3jvgB (B:)
epegshmlkllhfatfqnstsvlvgglgllgdvkmgsldsrtgniryyrpwlrpslpkgd
wdviessiksyvrdfsrlvqmyttvpypfvfqssigcelqsngtirtffdiayegqnflr
fnldagtwdqmqhnqlsakaehlmanastlneviqvllndtcvdilrlfiqagkadlerq
vppmavvfartagqaqlllvcrvtsfyprpiavtwlrdgrevppspalstgtvlpnadlt
yqlrstllvspqdghgyacrvqhcslgdrsllvpwhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3jvgB (B:)
shmlkllhfatfqnstsvlvgglgllgdvkmgsldsrtgniryyrpwlrpslpkgdwdvi
essiksyvrdfsrlvqmytvpypfvfqssigcelqsngtirtffdiayegqnflrfnlda
gtwdqmqhnqlsakaehlmanastlneviqvllndtcvdilrlfiqagkadlerqvppma
vvfartaqlllvcrvtsfyprpiavtwlrdgrevppspalstgtvlpnadltyqlrstll
vspqdghgyacrvqhcslgrsllvpwh
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3jvgC (C:)
dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
fqrlvhadftpssgstyackvehetlkepqvykwdpef
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3jvgD (D:)
dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
fqrlvhadftpssgstyackvehetlkepqvykwdpef