PDB entry 3jv6

View 3jv6 on RCSB PDB site
Description: Crystal structure of the dimerization domains p52 and RelB
Class: transcription
Keywords: NF-kB protein, Heterodimer, RelB and p52, Activator, Nucleus, Phosphoprotein, Transcription, Transcription regulation, ANK repeat, DNA-binding, Isopeptide bond
Deposited on 2009-09-15, released 2010-11-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-09-04, with a file datestamp of 2013-08-30.
Experiment type: XRAY
Resolution: 2.78 Å
R-factor: 0.205
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: transcription factor relb
    Species: Mus musculus [TaxId:10090]
    Gene: Relb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jv6a_
  • Chain 'B':
    Compound: Nuclear factor NF-kappa-B p100 subunit
    Species: Mus musculus [TaxId:10090]
    Gene: p52
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WTK5 (0-106)
      • conflict (103)
    Domains in SCOPe 2.07: d3jv6b_
  • Chain 'C':
    Compound: transcription factor relb
    Species: Mus musculus [TaxId:10090]
    Gene: Relb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jv6c_
  • Chain 'D':
    Compound: Nuclear factor NF-kappa-B p100 subunit
    Species: Mus musculus [TaxId:10090]
    Gene: p52
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WTK5 (0-End)
      • conflict (103)
    Domains in SCOPe 2.07: d3jv6d_
  • Chain 'E':
    Compound: transcription factor relb
    Species: Mus musculus [TaxId:10090]
    Gene: Relb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jv6e_
  • Chain 'F':
    Compound: Nuclear factor NF-kappa-B p100 subunit
    Species: Mus musculus [TaxId:10090]
    Gene: p52
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WTK5 (0-End)
      • conflict (103)
    Domains in SCOPe 2.07: d3jv6f_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3jv6A (A:)
tselricrinkesgpctggeelyllcdkvqkedisvvfstaswegradfsqadvhrqiai
vfktppyedleisepvtvnvflqrltdgvcseplpftylpr

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3jv6B (B:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypvved

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3jv6C (C:)
tselricrinkesgpctggeelyllcdkvqkedisvvfstaswegradfsqadvhrqiai
vfktppyedleisepvtvnvflqrltdgvcseplpftylpr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3jv6D (D:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypvved

    Sequence, based on observed residues (ATOM records): (download) 
    >3jv6D (D:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypvve

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3jv6E (E:)
tselricrinkesgpctggeelyllcdkvqkedisvvfstaswegradfsqadvhrqiai
vfktppyedleisepvtvnvflqrltdgvcseplpftylpr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3jv6F (F:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypvved

    Sequence, based on observed residues (ATOM records): (download) 
    >3jv6F (F:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypvv