PDB entry 3jv5

View 3jv5 on RCSB PDB site
Description: Crystal structure of the dimerization domains p52 homodimer
Class: transcription
Keywords: NF-kB protein, p52 homodimer, dimerization domain, Activator, ANK repeat, DNA-binding, Isopeptide bond, Nucleus, Phosphoprotein, Transcription, Transcription regulation
Deposited on 2009-09-15, released 2010-11-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2010-11-24, with a file datestamp of 2010-11-19.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.209
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nuclear factor NF-kappa-B p100 subunit
    Species: Mus musculus [TaxId:10090]
    Gene: p52
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jv5a_
  • Chain 'B':
    Compound: Nuclear factor NF-kappa-B p100 subunit
    Species: Mus musculus [TaxId:10090]
    Gene: p52
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jv5b_
  • Chain 'C':
    Compound: Nuclear factor NF-kappa-B p100 subunit
    Species: Mus musculus [TaxId:10090]
    Gene: p52
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jv5c_
  • Chain 'D':
    Compound: Nuclear factor NF-kappa-B p100 subunit
    Species: Mus musculus [TaxId:10090]
    Gene: p52
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jv5d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3jv5A (A:)
    asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
    yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3jv5B (B:)
    asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
    yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3jv5B (B:)
    snlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqy
    aivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3jv5C (C:)
    asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
    yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3jv5C (C:)
    nlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqya
    ivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3jv5D (D:)
    asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
    yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3jv5D (D:)
    snlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqy
    aivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyp