PDB entry 3jv5
View 3jv5 on RCSB PDB site
Description: Crystal structure of the dimerization domains p52 homodimer
Class: transcription
Keywords: NF-kB protein, p52 homodimer, dimerization domain, Activator, ANK repeat, DNA-binding, Isopeptide bond, Nucleus, Phosphoprotein, Transcription, Transcription regulation
Deposited on
2009-09-15, released
2010-11-24
The last revision prior to the SCOPe 2.07 freeze date was dated
2010-11-24, with a file datestamp of
2010-11-19.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.209
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nuclear factor NF-kappa-B p100 subunit
Species: Mus musculus [TaxId:10090]
Gene: p52
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3jv5a_ - Chain 'B':
Compound: Nuclear factor NF-kappa-B p100 subunit
Species: Mus musculus [TaxId:10090]
Gene: p52
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3jv5b_ - Chain 'C':
Compound: Nuclear factor NF-kappa-B p100 subunit
Species: Mus musculus [TaxId:10090]
Gene: p52
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3jv5c_ - Chain 'D':
Compound: Nuclear factor NF-kappa-B p100 subunit
Species: Mus musculus [TaxId:10090]
Gene: p52
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3jv5d_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3jv5A (A:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3jv5B (B:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
Sequence, based on observed residues (ATOM records): (download)
>3jv5B (B:)
snlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqy
aivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3jv5C (C:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
Sequence, based on observed residues (ATOM records): (download)
>3jv5C (C:)
nlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqya
ivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3jv5D (D:)
asnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkq
yaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyypl
Sequence, based on observed residues (ATOM records): (download)
>3jv5D (D:)
snlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqy
aivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyp