PDB entry 3j6v

View 3j6v on RCSB PDB site
Description: Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Class: ribosome
Keywords: Mitoribosome, mammalian, small subunit, cryo-EM, MRPs, 12S rRNA, RIBOSOME
Deposited on 2014-04-01, released 2014-06-18
Made obsolete by 3jd5 on 2016-07-13

The last revision prior to the SCOPe 2.08 freeze date was dated 2016-07-13, with a file datestamp of 2016-07-08.
Experiment type: EM
Resolution: 7 Å
R-factor: N/A
AEROSPACI score: -0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 28S ribosomal RNA, mitochondial
    Species: Bos taurus [TaxId:9913]
  • Chain 'B':
    Compound: 28S ribosomal protein S2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vb_
  • Chain 'E':
    Compound: 28S ribosomal protein S5, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6ve_
  • Chain 'F':
    Compound: 28S ribosomal protein S6, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vf_
  • Chain 'G':
    Compound: 28S ribosomal protein S7, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vg_
  • Chain 'I':
    Compound: 28S ribosomal protein S9, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vi_
  • Chain 'J':
    Compound: 28S ribosomal protein S10, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vj_
  • Chain 'K':
    Compound: 28S ribosomal protein S11, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vk_
  • Chain 'L':
    Compound: 28S ribosomal protein S12, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vl_
  • Chain 'N':
    Compound: 28S ribosomal protein S14, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vn_
  • Chain 'O':
    Compound: 28S ribosomal protein S15, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vo_
  • Chain 'P':
    Compound: 28S ribosomal protein S16, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vp_
  • Chain 'Q':
    Compound: 28S ribosomal protein S17, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vq_
  • Chain 'R':
    Compound: 28S ribosomal protein S18a, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vr_
  • Chain 'U':
    Compound: 28S ribosomal protein S21, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vu_
  • Chain 'V':
    Compound: 28S ribosomal protein S24, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3j6vv_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3j6vB (B:)
matgavlprllgagvraaprgraaqrgrtlgsaaaaaareperdsdrsarilseplkhsd
ffnvkelfsvrslfnarvhlghkagcrhrfmepyifgsrlgqdiidleqtathlqlalnf
tahvafrggiilfvsrarqfshliestarscgeyahtryfkgglltnaplllgarvrlpd
liiflhtlnnvfephvavrdaakmsiptvgvvdtncnpclitypvpgnddsppavqlfcq
lfqtavtrakekrrqlealyrlqgapgphpanpaapgapspgaqaqlgmghsp

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vB (B:)
rilseplkhsdffnvkelfsvrslfnarvhlghkagcrhrfmepyifgsrlgqdiidleq
tathlqlalnftahvafrggiilfvsrarqfshliestarscgeyahtryfkgglltnap
lllgarvrlpdliiflhtlnnvfephvavrdaakmsiptvgvvdtncnpclitypvpgnd
dsppavqlfcqlfqtavtrakekrrqlealyrlqgapgphpanpaapgapspgaqaqlgm
ghsp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3j6vE (E:)
maaavraagflpalcgasagrlwsrqlylntfptasiwalkavpsngpsssagargrcrs
thlgpalqtqcctpapgnvtaqqyrsysfftkltadelwkgalaetgagarkgrgkrtkr
krrkdlnrgqiigegrrgflwpglnaplmksgaiqtitqrskeeqekveadmvqqreewd
rkrkmkvkrergwsgnswggislgppdpgpngetyddfdtrilevrnvfnmtakegrkrs
vrvlvavgngrgaagfaigkateradafrkaknravhylhyieryedhtiyhdisltfkr
thikmkkqprgyglrchraitticrligikdmyakvsgsvnmlsltrglfqglsrqethq
qladkkslhvvefreecgplpivvaspqgalrkdpepedevpdikldwddvkavqgmkrs
vwsglkraat

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vE (E:)
fftkltadelwkgalaetgagarkgrgkrtkrkrrkdlnrgqiigegrrgflwpglnapl
mksgaiqtitqrskeeqekveadmvqqreewdrkrkmkvkrergwsgnswggislgppdp
gpngetyddfdtrilevrnvfnmtakegrkrsvrvlvavgngrgaagfaigkateradaf
rkaknravhylhyieryedhtiyhdisltfkrthikmkkqprgyglrchraitticrlig
ikdmyakvsgsvnmlsltrglfqglsrqethqqladkkslhvvefreecgplpivvaspq
galrkdpepedevpdikldwddvkavqgmkrsvwsglkraat

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j6vF (F:)
mpryelalilkamqrpetaaalkrtlealmdrgavvrslenlgertlpykmsahsqrhtr
ggyflvdfyaptttvasimehlsrdidvirpnvvkhpltqevkecegivpvpleeklyst
kkrk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3j6vG (G:)
maaptakvsrgwsglalgvriavlrlpgltqvrwsrygpeyqdpqidkeyyrkplaqlte
eetyerelrktqvikaapatktssvfedpviskftnmmmkggnkilarslmtqtleavkr
kqfekyhaasaeeqatvernpytifhqalkncepviglvpilkgghfyqvpvplaerrrr
flamkwmitecrekkprrmlmpeklsqelleafcnrgpvikrkhdmhkmaeanralahyr
ww

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vG (G:)
peyqdpqidkeyyrkplaqlteeetyerelrktqvikaapatktssvfedpviskftnmm
mkggnkilarslmtqtleavkrkqfekyhaasaeeqatvernpytifhqalkncepvigl
vpilkgghfyqvpvplaerrrrflamkwmitecrekkprrmlmpeklsqelleafcnrgp
vikrkhdmhkmaeanralahyrww

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3j6vI (I:)
maapsvscgaavpyrlflagrvsfareqglwkaaasglqtgtrcqilrlkhspavtttkn
vaalrresytvdfikkqieefnigkrhlanmmgedpetftqedvdraitylfpsglfekr
arpimkhpeeifpkqravqwgedgrpfhflfytgkqsyyslmheaygkvlhaeerqdqlr
akglfsekskskdligsrwlikeeleemlveklsdqdyaqfirllerlsalpcdaaeeef
vgrfrrtvtvqskkhlieplqydeqgmafstgqgkrktanaeavvyghgsgkieingvdy
llyfpvtqdreqlmfpfhfldrlgkhdvtctvsgggrssqagairlamsralcsfitede
vewmrqagllttdprvrerkkpgqegarrkftwkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vI (I:)
sytvdfikkqieefnigkrhlanmmgedpetftqedvdraitylfpsglfekrarpimkh
peeifpkqravqwgedgrpfhflfytgkqsyyslmheaygkvlhaeerqdqlrakglfse
kskskdligsrwlikeeleemlveklsdqdyaqfirllerlsalpcdaaeeefvgrfrrt
vtvqskkhlieplqydeqgmafstgqgkrktanaeavvyghgsgkieingvdyllyfpvt
qdreqlmfpfhfldrlgkhdvtctvsgggrssqagairlamsralcsfitedevewmrqa
gllttdprvrerkkpgqegarrkftwkkr

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j6vJ (J:)
mavravfgalgrrlwqgsknfsvsssrsniakndgfllstsmkwvqfsnlhvdvpkdltk
ptitisdepdtlykrlsvlvkghdkavldsyeyfavlaakelgisvkvhepprkierftl
lksvhifkkhrvqyemrtlyrclelehltgstadvyleyiqrnlpegvamevtktrleql
pehikkpvwettpeekgdsks

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3j6vK (K:)
mqvlrnsgswllrswawppttrvvagvpaptihmsaqqmqdaaakeevekaetpapapsr
ssfsiyppipgqesslrwagkkfeeipiahikasynntqihvvsaahqplarascgtegf
rnakkgtgiaaqtagiaaaakatgkgvthvrvvvkglgpgrlsaikgltmgglevisitd
ntpiphngcrprkarrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vK (K:)
agvpaptihmsaqqmqdaaakeevekaetpapapsrssfsiyppipgqesslrwagkkfe
eipiahikasynntqihvvsaahqplarascgtegfrnakkgtgiaaqtagiaaaakatg
kgvthvrvvvkglgpgrlsaikgltmgglevisitdntpiphngcrprkarrl

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3j6vL (L:)
mswsgllrglsmslnyglalaprpwgtrpmatlnqlhrrgppkfppskpgptegrpqlkg
vvlrtfirkpkkpnsanrkccrvrlstgreavcfipgeghnlqehhvvlvqggrtqdlpg
vklkvvrgkydcghvqkkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vL (L:)
atlnqlhrrgppkfppskpgptegrpqlkgvvlrtfirkpkkpnsanrkccrvrlstgre
avcfipgeghnlqehhvvlvqggrtqdlpgvklkvvrgkydcghvqkkk

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j6vN (N:)
matsmlgsllrivrqvvpssasgqarsyyvdwrmlrdvkrrkmayeyaderlrinslrkn
tilpkhlqevadeeiaalprdscpvrirnrcvmtsrprgvkrrwrlsrivfrhladhgql
sgiqraiw

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >3j6vO (O:)
mlraawralssirtqavtqppvlglpgggcakllsvqrdlpsslilqaargyatqkpvqq
sqeddpppsmllkdyqnvpgiekvddvvkrlislemankkemlkikkeqlmskvvenpkd
tssleaqivaltvkirsyeehmqkhqkdkahkryllmsidkrqkmlknlrktnypvfekt
ckelgieytfpppyhrkihrrlatkkalcirvfqevqklkkqkralktaaaaaqkqgqrn
pespsearseaiketq

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vO (O:)
tqkpvqqsqeddpppsmllkdyqnvpgiekvddvvkrlislemankkemlkikkeqlmsk
vvenpkdtssleaqivaltvkirsyeehmqkhqkdkahkryllmsidkrqkmlknlrktn
ypvfektckelgieytfpppyhrkihrrlatkkalcirvfqevqklkkqkralktaaaaa
qkqgqrnpespsearseaiketq

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >3j6vP (P:)
mvqlttvlckayrgghltirlalggctnrpfyrivaahnkcprdgrfveqlgsydpmpns
hgeklvalnldrirhwigcgahlskpvekllglsgffplhpmvitnaerlrrkraqevll
aaqktdteatetken

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vP (P:)
hltirlalggctnrpfyrivaahnkcprdgrfveqlgsydpmpnshgeklvalnldrirh
wigcgahlskpvekllglsgffplhpmvitnaerlrrkraqevllaaqktdteatetken

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j6vQ (Q:)
msvvrssvhakwivgkvigtamqktakvrvtrlvldpyllkyfnkrktyfahdalqqctv
gdivllkalpvprtkhvkhelaeivfkvgqvvdpvtgkrcagttylespvdlettplakn
leelslsttq

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >3j6vR (R:)
maalnvlvsgcgrflrglltgptvtswarppargfrevveiqegkttiiegritgtpkes
pnppnpsgqcpicrwnlkhkysyedvlllsqfirphggmlprsitglcqeehrkieecvk
mahragllpnhrpklpegffpktrprlnryltrwsprsvkpiynkghrwnkvrmavgspl
lkdnvsytgrplvlyh

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vR (R:)
veiqegkttiiegritgtpkespnppnpsgqcpicrwnlkhkysyedvlllsqfirphgg
mlprsitglcqeehrkieecvkmahragllpnhrpklpegffpktrprlnryltrwsprs
vkpiynkghrwnkvrmavgspllkdnvsytgrplvlyh

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j6vU (U:)
makhlkfiartvmvqegnvegayrtlnriltmdgliedikrrryyekpcrrrqresyetc
rriynmemarkinflmrknradpwqgc

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >3j6vV (V:)
mvalycggglrplmlswsrdlpciwralhtsavcfknraarvrvgkgnkpvtyeeahaph
yiahrkgwlslhtgnldgedhaaertvedvflrkfmlgtfpgcladqlilkrranqveic
alvlrqlpahkfyflvgysetllshfykcpvrlhlqtvpskvvykyi

    Sequence, based on observed residues (ATOM records): (download) 
    >3j6vV (V:)
vgkgnkpvtyeeahaphyiahrkgwlslhtgnldgedhaaertvedvflrkfmlgtfpgc
ladqlilkrranqveicalvlrqlpahkfyflvgysetllshfykcpvrlhlqtvpskvv
ykyi