PDB entry 3j3b

View 3j3b on RCSB PDB site
Description: Structure of the human 60S ribosomal proteins
Class: ribosome
Keywords: eukarya, eukaryotic, ribosomal, 80S, RNA, protein synthesis, mass spectrometry, RIBOSOME
Deposited on 2013-02-27, released 2013-05-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: EM
Resolution: 5 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 60S Ribosomal protein L8
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 60S Ribosomal protein L3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 60S Ribosomal protein L4
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 60S Ribosomal protein L5
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 60S ribosomal protein L6
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 60S Ribosomal protein L7
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 60S Ribosomal protein L7a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 60S ribosomal protein L9
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 60S ribosomal protein L10-like
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 60S Ribosomal protein L11
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 60S ribosomal protein L12
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 60s ribosomal protein l13
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 60S ribosomal protein L14
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 60S ribosomal protein L15
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 60S ribosomal protein L13a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 60S Ribosomal protein L17
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 60S Ribosomal protein L18
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 60S Ribosomal protein L19
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 60s ribosomal protein l18a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 60S Ribosomal protein L21
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 60S ribosomal protein L22
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 60s ribosomal protein l23
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 60S Ribosomal protein L24
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 60S Ribosomal protein L23a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 60S Ribosomal protein L26
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 60S ribosomal protein L27
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: 60S Ribosomal protein L27a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3ba_
  • Chain 'b':
    Compound: 60S ribosomal protein L29
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bb_
  • Chain 'c':
    Compound: 60s ribosomal protein l30
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bc_
  • Chain 'd':
    Compound: 60S Ribosomal protein L31
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bd_
  • Chain 'e':
    Compound: 60S Ribosomal protein L32
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3be_
  • Chain 'f':
    Compound: 60S ribosomal protein L35A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bf_
  • Chain 'g':
    Compound: 60S ribosomal protein L34
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bg_
  • Chain 'h':
    Compound: 60S Ribosomal protein L35
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bh_
  • Chain 'i':
    Compound: 60s ribosomal protein l36
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bi_
  • Chain 'j':
    Compound: 60S ribosomal protein L37
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bj_
  • Chain 'k':
    Compound: 60S ribosomal protein L38
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bk_
  • Chain 'l':
    Compound: 60S ribosomal protein L39
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bl_
  • Chain 'm':
    Compound: 60S ribosomal protein L40
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bm_
  • Chain 'n':
    Compound: 60S ribosomal protein L41
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bn_
  • Chain 'o':
    Compound: 60s ribosomal protein l36a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bo_
  • Chain 'p':
    Compound: 60S Ribosomal protein L37a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bp_
  • Chain 'q':
    Compound: 60S acidic ribosomal protein P0
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bq_
  • Chain 'r':
    Compound: 60S ribosomal protein L28
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3br_
  • Chain 's':
    Compound: 60S acidic ribosomal protein P1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bs_
  • Chain 't':
    Compound: 60S acidic ribosomal protein P1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bt_
  • Chain 'u':
    Compound: 60S acidic ribosomal protein P2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bu_
  • Chain 'v':
    Compound: 60S acidic ribosomal protein P2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bv_
  • Chain 'z':
    Compound: 60S Ribosomal protein L10a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3j3bz_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    No sequence available.

  • Chain 'W':
    No sequence available.

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.

  • Chain 'Z':
    No sequence available.

  • Chain 'a':
    Sequence, based on SEQRES records: (download) 
    >3j3ba (a:)
mpsrlrktrklrghvshghgrigkhrkhpggrgnagglhhhrinfdkyhpgyfgkvgmkh
yhlkrnqsfcptvnldklwtlvseqtrvnaaknktgaapiidvvrsgyykvlgkgklpkq
pvivkakffsrraeekiksvggacvlva

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3ba (a:)
psrlrktrklrghvshghgrigkhrkhpggrgnagglhhhrinfdkyhpgyfgkvgmkhy
hlkrnqsfcptvnldklwtlvseqtrvnaaknktgaapiidvvrsgyykvlgkgklpkqp
vivkakffsrraeekiksvggacvlva

  • Chain 'b':
    Sequence, based on SEQRES records: (download) 
    >3j3bb (b:)
maksknhtthnqsrkwhrngikkprsqryeslkgvdpkflrnmrfakkhnkkglkkmqan
nakamsaraeaikalvkpkevkpkipkgvsrkldrlayiahpklgkrarariakglrlcr
pkakakakakdqtkaqaaapasvpaqapkrtqaptkase

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bb (b:)
aksknhtthnqsrkwhrngikkprsqryeslkgvdpkflrnmrfakkhnkkglkkmqann
akamsaraeaikalvkpk

  • Chain 'c':
    Sequence, based on SEQRES records: (download) 
    >3j3bc (c:)
mvaakktkkslesinsrlqlvmksgkyvlgykqtlkmirqgkaklvilanncpalrksei
eyyamlaktgvhhysgnnielgtacgkyyrvctlaiidpgdsdiirsmpeqtgek

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bc (c:)
slesinsrlqlvmksgkyvlgykqtlkmirqgkaklvilanncpalrkseieyyamlakt
gvhhysgnnielgtacgkyyrvctlaiidpgdsdiirsmp

  • Chain 'd':
    Sequence, based on SEQRES records: (download) 
    >3j3bd (d:)
mapakkggekkkgrsainevvtreytinihkrihgvgfkkrapralkeirkfamkemgtp
dvridtrlnkavwakgirnvpyrirvrlsrkrnededspnklytlvtyvpvttfknlqtv
nvden

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bd (d:)
kgrsainevvtreytinihkrihgvgfkkrapralkeirkfamkemgtpdvridtrlnka
vwakgirnvpyrirvrlsrkrnededspnklytlvtyvpvttfknlqtvnvde

  • Chain 'e':
    Sequence, based on SEQRES records: (download) 
    >3j3be (e:)
maalrplvkpkivkkrtkkfirhqsdryvkikrnwrkprgidnrvrrrfkgqilmpnigy
gsnkktkhmlpsgfrkflvhnvkelevllmcnksycaeiahnvssknrkaiveraaqlai
rvtnpnarlrseene

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3be (e:)
maalrplvkpkivkkrtkkfirhqsdryvkikrnwrkprgidnrvrrrfkgqilmpnigy
gsnkktkhmlpsgfrkflvhnvkelevllmcnksycaeiahnvssknrkaiveraaqlai
rvtnpnarlrsee

  • Chain 'f':
    Sequence, based on SEQRES records: (download) 
    >3j3bf (f:)
msgrlwskaifagykrglrnqrehtallkiegvyardetefylgkrcayvykaknntvtp
ggkpnktrviwgkvtrahgnsgmvrakfrsnlpakaighrirvmlypsri

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bf (f:)
sgrlwskaifagykrglrnqrehtallkiegvyardetefylgkrcayvykaknntvtpg
gkpnktrviwgkvtrahgnsgmvrakfrsnlpakaighrirvmlypsri

  • Chain 'g':
    Sequence, based on SEQRES records: (download) 
    >3j3bg (g:)
mvqrltyrrrlsyntasnktrlsrtpgnrivylytkkvgkapksacgvcpgrlrgvravr
pkvlmrlsktkkhvsrayggsmcakcvrdrikraflieeqkivvkvlkaqaqsqkak

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bg (g:)
vqrltyrrrlsyntasnktrlsrtpgnrivylytkkvgkapksacgvcpgrlrgvravrp
kvlmrlsktkkhvsrayggsmcakcvrdrikraflieeqkivvkvlkaqaqsqk

  • Chain 'h':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j3bh (h:)
makikardlrgkkkeellkqlddlkvelsqlrvakvtggaasklskirvvrksiarvltv
inqtqkenlrkfykgkkykpldlrpkktramrrrlnkheenlktkkqqrkerlyplrkya
vka

  • Chain 'i':
    Sequence, based on SEQRES records: (download) 
    >3j3bi (i:)
malrypmavglnkghkvtknvskprhsrrrgrltkhtkfvrdmirevcgfapyerramel
lkvskdkralkfikkrvgthirakrkreelsnvlaamrkaaakkd

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bi (i:)
malrypmavglnkghkvtknvskprhsrrrgrltkhtkfvrdmirevcgfapyerramel
lkvskdkralkfikkrvgthirakrkreelsnvlaamrkaaak

  • Chain 'j':
    Sequence, based on SEQRES records: (download) 
    >3j3bj (j:)
mtkgtssfgkrrnkthtlcrrcgskayhlqkstcgkcgypakrkrkynwsakakrrnttg
tgrmrhlkivyrrfrhgfregttpkpkraavaassss

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bj (j:)
tkgtssfgkrrnkthtlcrrcgskayhlqkstcgkcgypakrkrkynwsakakrrnttgt
grmrhlkivyrrfrhgfregttpkpkraav

  • Chain 'k':
    Sequence, based on SEQRES records: (download) 
    >3j3bk (k:)
mprkieeikdflltarrkdaksvkikknkdnvkfkvrcsrylytlvitdkekaeklkqsl
ppglavkelk

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bk (k:)
prkieeikdflltarrkdaksvkikknkdnvkfkvrcsrylytlvitdkekaeklkqslp
pglavkelk

  • Chain 'l':
    Sequence, based on SEQRES records: (download) 
    >3j3bl (l:)
msshktfrikrflakkqkqnrpipqwirmktgnkirynskrrhwrrtklgl

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bl (l:)
sshktfrikrflakkqkqnrpipqwirmktgnkirynskrrhwrrtklgl

  • Chain 'm':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j3bm (m:)
iiepslrqlaqkyncdkmicrkcyarlhpravncrkkkcghtnnlrpkkkvk

  • Chain 'n':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j3bn (n:)
mrakwrkkrmrrlkrkrrkmrqrsk

  • Chain 'o':
    Sequence, based on SEQRES records: (download) 
    >3j3bo (o:)
mvnvpktrrtfckkcgkhqphkvtqykkgkdslyaqgkrrydrkqsgyggqtkpifrkka
kttkkivlrlecvepncrskrmlaikrckhfelggdkkrkgqviqf

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bo (o:)
vnvpktrrtfckkcgkhqphkvtqykkgkdslyaqgkrrydrkqsgyggqtkpifrkkak
ttkkivlrlecvepncrskrmlaikrckhfelggdkkrkgqviqf

  • Chain 'p':
    Sequence, based on SEQRES records: (download) 
    >3j3bp (p:)
makrtkkvgivgkygtrygaslrkmvkkieisqhakytcsfcgktkmkrravgiwhcgsc
mktvaggawtynttsavtvksairrlkelkdq

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bp (p:)
krtkkvgivgkygtrygaslrkmvkkieisqhakytcsfcgktkmkrravgiwhcgscmk
tvaggawtynttsavtvksairrlkelkdq

  • Chain 'q':
    Sequence, based on SEQRES records: (download) 
    >3j3bq (q:)
mpredratwksnyflkiiqllddypkcfivgadnvgskqmqqirmslrgkavvlmgkntm
mrkairghlennpalekllphirgnvgfvftkedlteirdmllankvpaaaragaiapce
vtvpaqntglgpektsffqalgittkisrgtieilsdvqliktgdkvgaseatllnmlni
spfsfglviqqvfdngsiynpevlditeetlhsrflegvrnvasvclqigyptvasvphs
iingykrvlalsvetdytfplaekvkafladpsafvaaapvaaattaapaaaaapakvea
keeseesdedmgfglfd

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bq (q:)
dratwksnyflkiiqllddypkcfivgadnvgskqmqqirmslrgkavvlmgkntmmrka
irghlennpalekllphirgnvgfvftkedlteirdmllankvpaaaragaiapcevtvp
aqntglgpektsffqalgittkisrgtieilsdvqliktgdkvgaseatllnmlnispfs
fglviqqvfdngsiynpevlditeetlhsrflegvrnvasvclqigyptvasvphsiing
ykrvlalsvetdytfplaekvkafladpsafvaaapvaaa

  • Chain 'r':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j3br (r:)
msahlqwmvvrncssflikrnkqtystepnnlkarnsfrynglihrktvgvepaadgkgv
vvvikrrsgqrkpatsyvrttinknaratlssirhmirknkyrpdlrmaairrasailrs
qkpvmvkrkrtrptkss

  • Chain 's':
    Sequence, based on SEQRES records: (download) 
    >3j3bs (s:)
masvselaciysalilhddevtvtedkinalikaagvnvepfwpglfakalanvnigsli
cnvgaggpapaagaapaggpapstaaapaeekkveakkeeseesdddmgfglfd

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bs (s:)
laciysalilhddevtvtedkinalikaagvnvepfwpglfakalanvnigslicnv

  • Chain 't':
    Sequence, based on SEQRES records: (download) 
    >3j3bt (t:)
masvselaciysalilhddevtvtedkinalikaagvnvepfwpglfakalanvnigsli
cnvgaggpapaagaapaggpapstaaapaeekkveakkeeseesdddmgfglfd

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bt (t:)
laciysalilhddevtvtedkinalikaagvnvepfwpglfakalanvnigslicnv

  • Chain 'u':
    Sequence, based on SEQRES records: (download) 
    >3j3bu (u:)
mryvasyllaalggnsspsakdikkildsvgieadddrlnkviselngkniedviaqgig
klasvpaggavavsaapgsaapaagsapaaaeekkdekkeeseesdddmgfglfd

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bu (u:)
mryvasyllaalggnsspsakdikkildsvgieadddrlnkviselngkniedvia

  • Chain 'v':
    Sequence, based on SEQRES records: (download) 
    >3j3bv (v:)
mryvasyllaalggnsspsakdikkildsvgieadddrlnkviselngkniedviaqgig
klasvpaggavavsaapgsaapaagsapaaaeekkdekkeeseesdddmgfglfd

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3bv (v:)
mryvasyllaalggnsspsakdikkildsvgieadddrlnkviselngkniedvia

  • Chain 'z':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j3bz (z:)
msskvsrdtlyeavrevlhgnqrkrrkfletvelqislknydpqkdkrfsgtvrlkstpr
pkfsvcvlgdqqhcdeakavdiphmdiealkklnknkklvkklakkydaflaseslikqi
prilgpglnkagkfpsllthnenmvakvdevkstikfqmkkvlclavavghvkmtddelv
ynihlavnflvsllkknwqnvralyikstmgkpqrly