SCOPe 2.06: Structural Classification of Proteins

PDB entry 3j3b

View 3j3b on RCSB PDB site
Description: Structure of the human 60S ribosomal proteins
Class: ribosome
Keywords: eukarya, eukaryotic, ribosomal, 80S, RNA, protein synthesis, mass spectrometry, RIBOSOME
Deposited on 2013-02-27, released 2013-05-01
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: EM
Resolution: 5 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: 60S Ribosomal protein L8
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62917
Chain 'B':
Compound: 60S Ribosomal protein L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P39023
Chain 'C':
Compound: 60S Ribosomal protein L4
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P36578
Chain 'D':
Compound: 60S Ribosomal protein L5
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P46777 (Start-296)
Chain 'E':
Compound: 60S ribosomal protein L6
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot Q02878 (Start-287)
Chain 'F':
Compound: 60S Ribosomal protein L7
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P18124 (Start-247)
Chain 'G':
Compound: 60S Ribosomal protein L7a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62424 (Start-265)
Chain 'H':
Compound: 60S ribosomal protein L9
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P32969 (0-End)
Chain 'I':
Compound: 60S ribosomal protein L10-like
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot Q96L21 (Start-213)
Chain 'J':
Compound: 60S Ribosomal protein L11
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62913
Chain 'K':
Compound: 60S ribosomal protein L12
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P30050 (0-End)
Chain 'L':
Compound: 60s ribosomal protein l13
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P26373 (Start-210)
Chain 'M':
Compound: 60S ribosomal protein L14
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P50914 (0-End)
Chain 'N':
Compound: 60S ribosomal protein L15
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P61313 (Start-203)
Chain 'O':
Compound: 60S ribosomal protein L13a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P40429 (Start-202)
Chain 'P':
Compound: 60S Ribosomal protein L17
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P18621
Chain 'Q':
Compound: 60S Ribosomal protein L18
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot Q07020 (0-187)
Chain 'R':
Compound: 60S Ribosomal protein L19
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P84098 (0-End)
Chain 'S':
Compound: 60s ribosomal protein l18a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot Q02543 (Start-175)
Chain 'T':
Compound: 60S Ribosomal protein L21
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P46778 (Start-159)
Chain 'U':
Compound: 60S ribosomal protein L22
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P35268
Chain 'V':
Compound: 60s ribosomal protein l23
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62829 (Start-139)
Chain 'W':
Compound: 60S Ribosomal protein L24
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P83731 (0-End)
Chain 'X':
Compound: 60S Ribosomal protein L23a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62750 (Start-155)
Chain 'Y':
Compound: 60S Ribosomal protein L26
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P61254
Chain 'Z':
Compound: 60S ribosomal protein L27
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P61353 (Start-135)
Chain 'a':
Compound: 60S Ribosomal protein L27a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P46776 (Start-147)
Domains in SCOPe 2.06: d3j3ba_
Chain 'b':
Compound: 60S ribosomal protein L29
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P47914
Domains in SCOPe 2.06: d3j3bb_
Chain 'c':
Compound: 60s ribosomal protein l30
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62888
Domains in SCOPe 2.06: d3j3bc_
Chain 'd':
Compound: 60S Ribosomal protein L31
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62899
Domains in SCOPe 2.06: d3j3bd_
Chain 'e':
Compound: 60S Ribosomal protein L32
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62910 (0-End)
Domains in SCOPe 2.06: d3j3be_
Chain 'f':
Compound: 60S ribosomal protein L35A
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P18077 (Start-109)
Domains in SCOPe 2.06: d3j3bf_
Chain 'g':
Compound: 60S ribosomal protein L34
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P49207
Domains in SCOPe 2.06: d3j3bg_
Chain 'h':
Compound: 60S Ribosomal protein L35
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P42766 (0-122)
Domains in SCOPe 2.06: d3j3bh_
Chain 'i':
Compound: 60s ribosomal protein l36
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9Y3U8 (0-End)
Domains in SCOPe 2.06: d3j3bi_
Chain 'j':
Compound: 60S ribosomal protein L37
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P61927
Domains in SCOPe 2.06: d3j3bj_
Chain 'k':
Compound: 60S ribosomal protein L38
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P63173 (Start-69)
Domains in SCOPe 2.06: d3j3bk_
Chain 'l':
Compound: 60S ribosomal protein L39
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62891 (Start-50)
Domains in SCOPe 2.06: d3j3bl_
Chain 'm':
Compound: 60S ribosomal protein L40
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62987 (0-51)
Domains in SCOPe 2.06: d3j3bm_
Chain 'n':
Compound: 60S ribosomal protein L41
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62945 (0-24)
Domains in SCOPe 2.06: d3j3bn_
Chain 'o':
Compound: 60s ribosomal protein l36a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P83881 (Start-105)
Domains in SCOPe 2.06: d3j3bo_
Chain 'p':
Compound: 60S Ribosomal protein L37a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P61513 (Start-91)
Domains in SCOPe 2.06: d3j3bp_
Chain 'q':
Compound: 60S acidic ribosomal protein P0
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P05388
Domains in SCOPe 2.06: d3j3bq_
Chain 'r':
Compound: 60S ribosomal protein L28
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P46779 (0-136)
Domains in SCOPe 2.06: d3j3br_
Chain 's':
Compound: 60S acidic ribosomal protein P1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P05386
Domains in SCOPe 2.06: d3j3bs_
Chain 't':
Compound: 60S acidic ribosomal protein P1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P05386
Domains in SCOPe 2.06: d3j3bt_
Chain 'u':
Compound: 60S acidic ribosomal protein P2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P05387 (0-End)
Domains in SCOPe 2.06: d3j3bu_
Chain 'v':
Compound: 60S acidic ribosomal protein P2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P05387 (0-End)
Domains in SCOPe 2.06: d3j3bv_
Chain 'z':
Compound: 60S Ribosomal protein L10a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P62906 (0-216)
Domains in SCOPe 2.06: d3j3bz_

PDB Chain Sequences:

Chain 'A':
No sequence available.
Chain 'B':
No sequence available.
Chain 'C':
No sequence available.
Chain 'D':
No sequence available.
Chain 'E':
No sequence available.
Chain 'F':
No sequence available.
Chain 'G':
No sequence available.
Chain 'H':
No sequence available.
Chain 'I':
No sequence available.
Chain 'J':
No sequence available.
Chain 'K':
No sequence available.
Chain 'L':
No sequence available.
Chain 'M':
No sequence available.
Chain 'N':
No sequence available.
Chain 'O':
No sequence available.
Chain 'P':
No sequence available.
Chain 'Q':
No sequence available.
Chain 'R':
No sequence available.
Chain 'S':
No sequence available.
Chain 'T':
No sequence available.
Chain 'U':
No sequence available.
Chain 'V':
No sequence available.
Chain 'W':
No sequence available.
Chain 'X':
No sequence available.
Chain 'Y':
No sequence available.
Chain 'Z':
No sequence available.

Chain 'a':
Sequence, based on SEQRES records: (download)

>3j3ba (a:)
mpsrlrktrklrghvshghgrigkhrkhpggrgnagglhhhrinfdkyhpgyfgkvgmkh
yhlkrnqsfcptvnldklwtlvseqtrvnaaknktgaapiidvvrsgyykvlgkgklpkq
pvivkakffsrraeekiksvggacvlva

Sequence, based on observed residues (ATOM records): (download)

>3j3ba (a:)
psrlrktrklrghvshghgrigkhrkhpggrgnagglhhhrinfdkyhpgyfgkvgmkhy
hlkrnqsfcptvnldklwtlvseqtrvnaaknktgaapiidvvrsgyykvlgkgklpkqp
vivkakffsrraeekiksvggacvlva

Chain 'b':
Sequence, based on SEQRES records: (download)

>3j3bb (b:)
maksknhtthnqsrkwhrngikkprsqryeslkgvdpkflrnmrfakkhnkkglkkmqan
nakamsaraeaikalvkpkevkpkipkgvsrkldrlayiahpklgkrarariakglrlcr
pkakakakakdqtkaqaaapasvpaqapkrtqaptkase

Sequence, based on observed residues (ATOM records): (download)

>3j3bb (b:)
aksknhtthnqsrkwhrngikkprsqryeslkgvdpkflrnmrfakkhnkkglkkmqann
akamsaraeaikalvkpk

Chain 'c':
Sequence, based on SEQRES records: (download)

>3j3bc (c:)
mvaakktkkslesinsrlqlvmksgkyvlgykqtlkmirqgkaklvilanncpalrksei
eyyamlaktgvhhysgnnielgtacgkyyrvctlaiidpgdsdiirsmpeqtgek

Sequence, based on observed residues (ATOM records): (download)

>3j3bc (c:)
slesinsrlqlvmksgkyvlgykqtlkmirqgkaklvilanncpalrkseieyyamlakt
gvhhysgnnielgtacgkyyrvctlaiidpgdsdiirsmp

Chain 'd':
Sequence, based on SEQRES records: (download)

>3j3bd (d:)
mapakkggekkkgrsainevvtreytinihkrihgvgfkkrapralkeirkfamkemgtp
dvridtrlnkavwakgirnvpyrirvrlsrkrnededspnklytlvtyvpvttfknlqtv
nvden

Sequence, based on observed residues (ATOM records): (download)

>3j3bd (d:)
kgrsainevvtreytinihkrihgvgfkkrapralkeirkfamkemgtpdvridtrlnka
vwakgirnvpyrirvrlsrkrnededspnklytlvtyvpvttfknlqtvnvde

Chain 'e':
Sequence, based on SEQRES records: (download)

>3j3be (e:)
maalrplvkpkivkkrtkkfirhqsdryvkikrnwrkprgidnrvrrrfkgqilmpnigy
gsnkktkhmlpsgfrkflvhnvkelevllmcnksycaeiahnvssknrkaiveraaqlai
rvtnpnarlrseene

Sequence, based on observed residues (ATOM records): (download)

>3j3be (e:)
maalrplvkpkivkkrtkkfirhqsdryvkikrnwrkprgidnrvrrrfkgqilmpnigy
gsnkktkhmlpsgfrkflvhnvkelevllmcnksycaeiahnvssknrkaiveraaqlai
rvtnpnarlrsee

Chain 'f':
Sequence, based on SEQRES records: (download)

>3j3bf (f:)
msgrlwskaifagykrglrnqrehtallkiegvyardetefylgkrcayvykaknntvtp
ggkpnktrviwgkvtrahgnsgmvrakfrsnlpakaighrirvmlypsri

Sequence, based on observed residues (ATOM records): (download)

>3j3bf (f:)
sgrlwskaifagykrglrnqrehtallkiegvyardetefylgkrcayvykaknntvtpg
gkpnktrviwgkvtrahgnsgmvrakfrsnlpakaighrirvmlypsri

Chain 'g':
Sequence, based on SEQRES records: (download)

>3j3bg (g:)
mvqrltyrrrlsyntasnktrlsrtpgnrivylytkkvgkapksacgvcpgrlrgvravr
pkvlmrlsktkkhvsrayggsmcakcvrdrikraflieeqkivvkvlkaqaqsqkak

Sequence, based on observed residues (ATOM records): (download)

>3j3bg (g:)
vqrltyrrrlsyntasnktrlsrtpgnrivylytkkvgkapksacgvcpgrlrgvravrp
kvlmrlsktkkhvsrayggsmcakcvrdrikraflieeqkivvkvlkaqaqsqk

Chain 'h':
Sequence; same for both SEQRES and ATOM records: (download)

>3j3bh (h:)
makikardlrgkkkeellkqlddlkvelsqlrvakvtggaasklskirvvrksiarvltv
inqtqkenlrkfykgkkykpldlrpkktramrrrlnkheenlktkkqqrkerlyplrkya
vka

Chain 'i':
Sequence, based on SEQRES records: (download)

>3j3bi (i:)
malrypmavglnkghkvtknvskprhsrrrgrltkhtkfvrdmirevcgfapyerramel
lkvskdkralkfikkrvgthirakrkreelsnvlaamrkaaakkd

Sequence, based on observed residues (ATOM records): (download)

>3j3bi (i:)
malrypmavglnkghkvtknvskprhsrrrgrltkhtkfvrdmirevcgfapyerramel
lkvskdkralkfikkrvgthirakrkreelsnvlaamrkaaak

Chain 'j':
Sequence, based on SEQRES records: (download)

>3j3bj (j:)
mtkgtssfgkrrnkthtlcrrcgskayhlqkstcgkcgypakrkrkynwsakakrrnttg
tgrmrhlkivyrrfrhgfregttpkpkraavaassss

Sequence, based on observed residues (ATOM records): (download)

>3j3bj (j:)
tkgtssfgkrrnkthtlcrrcgskayhlqkstcgkcgypakrkrkynwsakakrrnttgt
grmrhlkivyrrfrhgfregttpkpkraav

Chain 'k':
Sequence, based on SEQRES records: (download)

>3j3bk (k:)
mprkieeikdflltarrkdaksvkikknkdnvkfkvrcsrylytlvitdkekaeklkqsl
ppglavkelk

Sequence, based on observed residues (ATOM records): (download)

>3j3bk (k:)
prkieeikdflltarrkdaksvkikknkdnvkfkvrcsrylytlvitdkekaeklkqslp
pglavkelk

Chain 'l':
Sequence, based on SEQRES records: (download)

>3j3bl (l:)
msshktfrikrflakkqkqnrpipqwirmktgnkirynskrrhwrrtklgl

Sequence, based on observed residues (ATOM records): (download)

>3j3bl (l:)
sshktfrikrflakkqkqnrpipqwirmktgnkirynskrrhwrrtklgl

Chain 'm':
Sequence; same for both SEQRES and ATOM records: (download)

>3j3bm (m:)
iiepslrqlaqkyncdkmicrkcyarlhpravncrkkkcghtnnlrpkkkvk

Chain 'n':
Sequence; same for both SEQRES and ATOM records: (download)
```
>3j3bn (n:)
mrakwrkkrmrrlkrkrrkmrqrsk
```

Chain 'o':
Sequence, based on SEQRES records: (download)

>3j3bo (o:)
mvnvpktrrtfckkcgkhqphkvtqykkgkdslyaqgkrrydrkqsgyggqtkpifrkka
kttkkivlrlecvepncrskrmlaikrckhfelggdkkrkgqviqf

Sequence, based on observed residues (ATOM records): (download)

>3j3bo (o:)
vnvpktrrtfckkcgkhqphkvtqykkgkdslyaqgkrrydrkqsgyggqtkpifrkkak
ttkkivlrlecvepncrskrmlaikrckhfelggdkkrkgqviqf

Chain 'p':
Sequence, based on SEQRES records: (download)

>3j3bp (p:)
makrtkkvgivgkygtrygaslrkmvkkieisqhakytcsfcgktkmkrravgiwhcgsc
mktvaggawtynttsavtvksairrlkelkdq

Sequence, based on observed residues (ATOM records): (download)

>3j3bp (p:)
krtkkvgivgkygtrygaslrkmvkkieisqhakytcsfcgktkmkrravgiwhcgscmk
tvaggawtynttsavtvksairrlkelkdq

Chain 'q':
Sequence, based on SEQRES records: (download)

>3j3bq (q:)
mpredratwksnyflkiiqllddypkcfivgadnvgskqmqqirmslrgkavvlmgkntm
mrkairghlennpalekllphirgnvgfvftkedlteirdmllankvpaaaragaiapce
vtvpaqntglgpektsffqalgittkisrgtieilsdvqliktgdkvgaseatllnmlni
spfsfglviqqvfdngsiynpevlditeetlhsrflegvrnvasvclqigyptvasvphs
iingykrvlalsvetdytfplaekvkafladpsafvaaapvaaattaapaaaaapakvea
keeseesdedmgfglfd

Sequence, based on observed residues (ATOM records): (download)

>3j3bq (q:)
dratwksnyflkiiqllddypkcfivgadnvgskqmqqirmslrgkavvlmgkntmmrka
irghlennpalekllphirgnvgfvftkedlteirdmllankvpaaaragaiapcevtvp
aqntglgpektsffqalgittkisrgtieilsdvqliktgdkvgaseatllnmlnispfs
fglviqqvfdngsiynpevlditeetlhsrflegvrnvasvclqigyptvasvphsiing
ykrvlalsvetdytfplaekvkafladpsafvaaapvaaa

Chain 'r':
Sequence; same for both SEQRES and ATOM records: (download)

>3j3br (r:)
msahlqwmvvrncssflikrnkqtystepnnlkarnsfrynglihrktvgvepaadgkgv
vvvikrrsgqrkpatsyvrttinknaratlssirhmirknkyrpdlrmaairrasailrs
qkpvmvkrkrtrptkss

Chain 's':
Sequence, based on SEQRES records: (download)

>3j3bs (s:)
masvselaciysalilhddevtvtedkinalikaagvnvepfwpglfakalanvnigsli
cnvgaggpapaagaapaggpapstaaapaeekkveakkeeseesdddmgfglfd

Sequence, based on observed residues (ATOM records): (download)

>3j3bs (s:)
laciysalilhddevtvtedkinalikaagvnvepfwpglfakalanvnigslicnv

Chain 't':
Sequence, based on SEQRES records: (download)

>3j3bt (t:)
masvselaciysalilhddevtvtedkinalikaagvnvepfwpglfakalanvnigsli
cnvgaggpapaagaapaggpapstaaapaeekkveakkeeseesdddmgfglfd

Sequence, based on observed residues (ATOM records): (download)

>3j3bt (t:)
laciysalilhddevtvtedkinalikaagvnvepfwpglfakalanvnigslicnv

Chain 'u':
Sequence, based on SEQRES records: (download)

>3j3bu (u:)
mryvasyllaalggnsspsakdikkildsvgieadddrlnkviselngkniedviaqgig
klasvpaggavavsaapgsaapaagsapaaaeekkdekkeeseesdddmgfglfd

Sequence, based on observed residues (ATOM records): (download)

>3j3bu (u:)
mryvasyllaalggnsspsakdikkildsvgieadddrlnkviselngkniedvia

Chain 'v':
Sequence, based on SEQRES records: (download)

>3j3bv (v:)
mryvasyllaalggnsspsakdikkildsvgieadddrlnkviselngkniedviaqgig
klasvpaggavavsaapgsaapaagsapaaaeekkdekkeeseesdddmgfglfd

Sequence, based on observed residues (ATOM records): (download)

>3j3bv (v:)
mryvasyllaalggnsspsakdikkildsvgieadddrlnkviselngkniedvia

Chain 'z':
Sequence; same for both SEQRES and ATOM records: (download)

>3j3bz (z:)
msskvsrdtlyeavrevlhgnqrkrrkfletvelqislknydpqkdkrfsgtvrlkstpr
pkfsvcvlgdqqhcdeakavdiphmdiealkklnknkklvkklakkydaflaseslikqi
prilgpglnkagkfpsllthnenmvakvdevkstikfqmkkvlclavavghvkmtddelv
ynihlavnflvsllkknwqnvralyikstmgkpqrly