PDB entry 3izb

View 3izb on RCSB PDB site
Description: Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Class: ribosome
Keywords: eukaryotic ribosome,homology modeling,de novo modeling,ribosomal proteins,novel ribosomal proteins, RIBOSOME
Deposited on 2010-10-12, released 2010-12-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: EM
Resolution: 8.8 Å
R-factor: N/A
AEROSPACI score: -0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 40S ribosomal protein rpS0 (S2p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izba_
  • Chain 'B':
    Compound: 40S ribosomal protein rpS3 (S3p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbb_
  • Chain 'C':
    Compound: 40S ribosomal protein rpS9 (S4p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 40S ribosomal protein rpS4 (S4e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbd_
  • Chain 'E':
    Compound: 40S ribosomal protein rpS2 (S5p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbe_
  • Chain 'F':
    Compound: 40S ribosomal protein rpS5 (S7p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbf_
  • Chain 'G':
    Compound: 40S ribosomal protein rpS7 (S7e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IZB (Start-143)
  • Chain 'H':
    Compound: 40S ribosomal protein rpS22 (S8p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbh_
  • Chain 'I':
    Compound: 40S ribosomal protein rpS16 (S9p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbi_
  • Chain 'J':
    Compound: 40S ribosomal protein rpS20 (S10p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbj_
  • Chain 'K':
    Compound: 40S ribosomal protein rpS14 (S11p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbk_
  • Chain 'L':
    Compound: 40S ribosomal protein rpS23 (S12p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbl_
  • Chain 'M':
    Compound: 40S ribosomal protein rpS18 (S13p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbm_
  • Chain 'N':
    Compound: 40S ribosomal protein rpS29 (S14p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbn_
  • Chain 'O':
    Compound: 40S ribosomal protein rpS13 (S15p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbo_
  • Chain 'P':
    Compound: 40S ribosomal protein rpS11 (S17p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbp_
  • Chain 'Q':
    Compound: 40S ribosomal protein rpS17 (S17e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbq_
  • Chain 'R':
    Compound: 40S ribosomal protein rpS15 (S19p)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbr_
  • Chain 'S':
    Compound: 40S ribosomal protein rpS19 (S19e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbs_
  • Chain 'T':
    Compound: 40S ribosomal protein rpS21 (S21e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbt_
  • Chain 'U':
    Compound: 40S ribosomal protein S24
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbu_
  • Chain 'V':
    Compound: 40S ribosomal protein rpS25 (S25e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbv_
  • Chain 'W':
    Compound: 40S ribosomal protein rpS26 (S26e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IZB (Start-92)
  • Chain 'X':
    Compound: 40S ribosomal protein rpS27 (S27e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbx_
  • Chain 'Y':
    Compound: 40S ribosomal protein rpS28 (S28e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izby_
  • Chain 'Z':
    Compound: 40S ribosomal protein rpS30 (S30e)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3izbz_
  • Chain 'a':
    Compound: 40S ribosomal protein RACK1 (RACK1)
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: Unknown 40S ribosomal protein XS1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IZB (Start-36)
  • Chain 'c':
    Compound: Unknown 40S ribosomal protein XS2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IZB (Start-25)

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3izbA (A:)
mslpatfdltpedaqlllaanthlgarnvqvhqepyvfnarpdgvhvinvgktweklvla
ariiaaipnpedvvaissrtfgqravlkfaahtgatpiagrftpgsftnyitrsfkeprl
vivtdprsdaqaikeasyvnipvialtdldspsefvdvaipcnnrgkhsigliwyllare
vlrlrgalvdrtqpwsimpdlyfyrdpeeveqqvaeeatteeageeeakeevteeqaeat
ewaeenadnvew

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3izbB (B:)
mvaliskkrklvadgvfyaelnefftrelaeegysgvevrvtptkteviiratrtqdvlg
engrrineltllvqkrfkyapgtivlyaervqdrglsavaqaesmkfkllnglairraay
gvvryvmesgakgcevvvsgklraarakamkfadgflihsgqpvndfidtatrhvlmrqg
vlgikvkimrdpaksrtgpkalpdavtiiepkeeepilapsvkdyrpaeeteaqaepvea

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbB (B:)
vadgvfyaelnefftrelaeegysgvevrvtptkteviiratrtqdvlgengrrineltl
lvqkrfkyapgtivlyaervqdrglsavaqaesmkfkllnglairraaygvvryvmesga
kgcevvvsgklraarakamkfadgflihsgqpvndfidtatrhvlmrqgvlgikvkimrd
paksrtgpkalpdavtiiepkeee

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3izbD (D:)
margpkkhlkrlaaphhwlldklsgcyaprpsagphklreslplivflrnrlkyalngre
vkailmqrhvkvdgkvrtdttypagfmdvitldatnenfrlvydvkgrfavhritdeeas
yklgkvkkvqlgkkgvpyvvthdgrtirypdpnikvndtvkidlasgkitdfikfdagkl
vyvtggrnlgrigtivhkerhdggfdlvhikdsldntfvtrlnnvfvigeqgkpyislpk
gkgiklsiaeerdrrraqqgl

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbD (D:)
plivflrnrlkyalngrevkailmqrhvkvdgkvrtdttypagfmdvitldatnenfrlv
ydvkgrfavhritdeeasyklgkvkkvqlgkkgvpyvvthdgrtirypdpnikvndtvki
dlasgkitdfikfdagklvyvtggrnlgrigtivhkerhdggfdlvhikdsldntfvtrl
nnvfvigeqgkpyislpkgk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3izbE (E:)
msapeaqqqkrggfggrnrgrpnrrgprnteekgwvpvtklgrlvkagkittieeiflhs
lpvkefqiidtllpglqdevmnikpvqkqtragqrtrfkavvvvgdsnghvglgiktake
vagairagiiiaklsvipirrgywgtnlgqphslatkttgkcgsvtvrlipaprgsgiva
spavkkllqlagvedvytqsngktrtlentlkaafvaigntygfltpnlwaeqplpvspl
diysdeasaqkkrf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3izbF (F:)
msdteapvevqedfevveeftpvvlatpipeevqqaqteiklfnkwsfeevevkdaslvd
yvqvrqpifvahtagryankrfrkaqcpiierltnslmmngrnngkklkavriikhtldi
invltdqnpiqvvvdaitntgpredttrvggggaarrqavdvsplrrvnqaialltigar
eaafrniktiaetlaeelinaakgsstsyaikkkdelervaksnr

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbF (F:)
tpipeevqqaqteiklfnkwsfeevevkdaslvdyvqvrqpifvahtagryankrfrkaq
cpiierltnslmmngrnngkklkavriikhtldiinvltdqnpiqvvvdaitntgpredt
trvggggaarrqavdvsplrrvnqaialltigareaafrniktiaetlaeelinaakgss
tsyaikkkdelervaksnr

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3izbH (H:)
mtrssvladalnainnaektgkrqvlirpsskviikflqvmqkhgyigefeyiddhrsgk
ivvqlngrlnkcgvisprfnvkigdiekwtanllparqfgyvilttsagimdheearrkh
vsgkilgfvy

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3izbI (I:)
msavpsvqtfgkkksatavahvkagkglikvngspitlvepeilrfkvyeplllvgldkf
snidirvrvtggghvsqvyairqaiakglvayhqkyvdeqsknelkkaftsydrtlliad
srrpepkkfggkgarsrfqksyr

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbI (I:)
avahvkagkglikvngspitlvepeilrfkvyeplllvgldkfsnidirvrvtggghvsq
vyairqaiakglvayhqkyvdeqsknelkkaftsydrtlliadsrrpepkkfggkgarsr
fqksyr

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3izbJ (J:)
msdfqkekveeqeqqqqqiikiritltstkvkqlenvssnivknaeqhnlvkkgpvrlpt
kvlkistrktpngegsktwetyemrihkryidleapvqivkritqitiepgvdvevvvas
n

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbJ (J:)
veeqeqqqqqiikiritltstkvkqlenvssnivknaeqhnlvkkgpvrlptkvlkistr
ktpngegsktwetyemrihkryidleapvqivkritqitiepgvdvevvvasn

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3izbK (K:)
msnvvqardnsqvfgvariyasfndtfvhvtdlsgketiarvtggmkvkadrdesspyaa
mlaaqdvaakckevgitavhvkiratggtrtktpgpggqaalralarsglrigriedvtp
vpsdstrkkggrrgrrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbK (K:)
iyasfndtfvhvtdlsgketiarvtggmkvkadrdesspyaamlaaqdvaakckevgita
vhvkiratggtrtktpgpggqaalralarsglrigriedvtpvpsdstrkkggrrgrrl

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3izbL (L:)
mgkgkprglnsarklrvhrrnnrwaennykkrllgtafksspfggsshakgivleklgie
skqpnsairkcvrvqlikngkkvtafvpndgclnfvdendevllagfgrkgkakgdipgv
rfkvvkvsgvsllalwkekkekprs

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3izbM (M:)
mslvvqeqgsfqhilrllntnvdgnikivyalttikgvgrrysnlvckkadvdlhkrage
ltqeelerivqimqnpthykipawflnrqnditdgkdyhtlannvesklrddlerlkkir
ahrgirhfwglrvrgqhtkttgrrra

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbM (M:)
eqgsfqhilrllntnvdgnikivyalttikgvgrrysnlvckkadvdlhkrageltqeel
erivqimqnpthykipawflnrqnditdgkdyhtlannvesklrddlerlkkirahrgir
hfwglrvrgqhtkttgrrra

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >3izbN (N:)
mahenvwfshprrygkgsrqcrvcsshtglirkyglnicrqcfrekandigfnkfr

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbN (N:)
shprrygkgsrqcrvcsshtglirkyglnicrqcfrekandigfnkfr

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >3izbO (O:)
mgrmhsagkgisssaipysrnapawfklssesvieqivkyarkgltpsqigvllrdahgv
tqarvitgnkimrilksnglapeipedlyylikkavsvrkhlernrkdkdakfrlilies
rihrlaryyrtvavlppnwkyesatasalvn

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbO (O:)
esvieqivkyarkgltpsqigvllrdahgvtqarvitgnkimrilksnglapeipedlyy
likkavsvrkhlernrkdkdakfrliliesrihrlaryyrtvavlppnwkyesatasalv
n

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >3izbP (P:)
msteltvqserafqkqphifnnpkvktskrtkrwyknaglgfktpktaiegsyidkkcpf
tglvsirgkiltgtvvstkmhrtivirraylhyipkynryekrhknvpvhvspafrvqvg
divtvgqcrpisktvrfnvvkvsaaagkankqfakf

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbP (P:)
glgfktpktaiegsyidkkcpftglvsirgkiltgtvvstkmhrtivirraylhyipkyn
ryekrhknvpvhvspafrvqvgdiv

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3izbQ (Q:)
mgrvrtktvkraskalieryypkltldfqtnkrlcdeiatiqskrlrnkiagytthlmkr
iqkgpvrgisfklqeeererkdqyvpevsaldlsrsngvlnvdnqtsdlvkslglklpls
vinvsaqrdrryrkrv

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >3izbR (R:)
msqavnakkrvfkthsyrgvdlekllemstedfvklaparvrrrfargmtskpagfmkkl
raaklaapenekpapvrthmrnmiivpemigsvvgiyngkafnqveirpemlghylgefs
itytpvrhgragattsrfiplk

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbR (R:)
mtskpagfmkklraaklaapenekpapvrthmrnmiivpemigsvvgiyngkafnqveir
pemlghylgefsitytpvrhgragatts

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3izbS (S:)
mpgvsvrdvaaqdfinayasflqrqgklevpgyvdivktssgnemppqdaegwfykraas
varhiymrkqvgvgklnklyggaksrgvrpykhidasgsinrkvlqalekigiveispkg
grrisengqrdldriaaqtleede

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3izbT (T:)
mendkgqlvelyvprkcsatnriikaddhasvqinvakvdeegraipgeyvtyalsgyvr
srgesddslnrlaqndgllknvwsysr

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >3izbU (U:)
msdavtirtrkvisnpllarkqfvvdvlhpnranvskdelreklaevykaekdavsvfgf
rtqfgggksvgfglvynsvaeakkfeptyrlvryglaekvekasrqqrkqkknrdkkifg
tgkrlakkvarrnad

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbU (U:)
msdavtirtrkvisnpllarkqfvvdvlhpnranvskdelreklaevykaekdavsvfgf
rtqfgggksvgfglvynsvaeakkfeptyrlvrygl

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >3izbV (V:)
mppkqqlskaakaaaalaggkkskkkwskksmkdraqhavildqekydrilkevptyryv
svsvlvdrlkiggslarialrhlekegiikpiskhskqaiytratase

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbV (V:)
kkkwskksmkdraqhavildqekydrilkevptyryvsvsvlvdrlkiggslarialrhl
ekegiikpiskhskqaiytratase

  • Chain 'W':
    No sequence available.

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >3izbX (X:)
mvlvqdllhptaasearkhklktlvqgprsyfldvkcpgclnittvfshaqtavtcescs
tilctptggkaklsegtsfrrk

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbX (X:)
yfldvkcpgclnittvfshaqtavtcescstilctptggkaklsegtsfr

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >3izbY (Y:)
mdnktpvtlakvikvlgrtgsrggvtqvrvefledtsrtivrnvkgpvrendilvlmese
rearrlr

    Sequence, based on observed residues (ATOM records): (download) 
    >3izbY (Y:)
mdnktpvtlakvikvlgrtgsrggvtqvrvefledtsrtivrnvkgpvrendilvlmese

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3izbZ (Z:)
makvhgslaragkvksqtpkvektekpkkpkgraykrllytrrfvnvtlvngkrrmnpgp
svq

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    No sequence available.