PDB entry 3ilq
View 3ilq on RCSB PDB site
Description: Structure of mCD1d with bound glycolipid BbGL-2c from Borrelia burgdorferi
Class: Immune System
Keywords: antigen presentation, iNKT cells, host defense, borrelia burgdorferi, CD1, Cell membrane, Disulfide bond, Endosome, Glycoprotein, Immune response, Immunoglobulin domain, Innate immunity, Lysosome, Membrane, Transmembrane, MHC I, Immune System
Deposited on
2009-08-07, released
2010-01-26
The last revision prior to the SCOPe 2.02 freeze date was dated
2010-03-02, with a file datestamp of
2010-02-26.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.21
AEROSPACI score: 0.4
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'C':
Compound: T-cell surface glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1.1, CD1d, Cd1d1
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2m, beta 2 microblobulin, mCG_11606, RP23-34E24.5-001
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3ilqd_ - Heterogens: NAG, 1O2, HOH
PDB Chain Sequences:
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3ilqD (D:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3ilqD (D:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm