PDB entry 3ikq

View 3ikq on RCSB PDB site
Description: Crystal structure of alpha 1-2 mannobiose bound trimeric human lung surfactant protein D
Class: sugar binding protein
Keywords: Trimeric recombinant fragment, neck+CRD, Collagen, Disulfide bond, Extracellular matrix, Gaseous exchange, Glycoprotein, Hydroxylation, Lectin, Secreted, Surface film, SUGAR BINDING PROTEIN
Deposited on 2009-08-06, released 2009-11-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ikqa1, d3ikqa2
  • Chain 'B':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ikqb1, d3ikqb2
  • Chain 'C':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ikqc1, d3ikqc2
  • Heterogens: CA, MAN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ikqA (A:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >3ikqA (A:)
qvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqaggqla
sprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnddggse
dcveiftngkwndracgekrlvvcef

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ikqB (B:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >3ikqB (B:)
qvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqaggqla
sprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnddggse
dcveiftngkwndracgekrlvvcef

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ikqC (C:)
gspglkgdkgipgdkgakgesglpdvaslrqqvealqgqvqhlqaafsqykkvelfpngq
svgekifktagfvkpfteaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtds
ktegkftyptgeslvysnwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >3ikqC (C:)
vealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqaggqlas
prsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnddggsed
cveiftngkwndracgekrlvvcef