PDB entry 3ikc

View 3ikc on RCSB PDB site
Description: Structure of S67-27 in Complex with Kdo(2.8)-7-O-methyl-Kdo
Class: immune system
Keywords: antibody, Kdo, Chlamydia, LPS, Fab, carbohydrate, IMMUNE SYSTEM
Deposited on 2009-08-05, released 2009-10-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Immunoglobulin light chain (IGG3)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IKC (Start-217)
    Domains in SCOPe 2.08: d3ikca1, d3ikca2
  • Chain 'B':
    Compound: Immunoglobulin heavy chain (IGG3)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IKC (0-225)
    Domains in SCOPe 2.08: d3ikcb_
  • Chain 'C':
    Compound: Immunoglobulin light chain (IGG3)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IKC (Start-217)
    Domains in SCOPe 2.08: d3ikcc1, d3ikcc2
  • Chain 'D':
    Compound: Immunoglobulin heavy chain (IGG3)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IKC (0-225)
    Domains in SCOPe 2.08: d3ikcd_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ikcA (A:)
divmtqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvqaedlavyyckqsnnlrtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne

    Sequence, based on observed residues (ATOM records): (download) 
    >3ikcA (A:)
ivmtqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastre
sgvpdrftgsgsgtdftltissvqaedlavyyckqsnnlrtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ikcB (B:)
evmlvesggglvqpgnslrlscatsgftftdyymswvrqppgkalewlgfirnkakgytt
eysasvkgrftisrdnsqsilylqmntlraedsatyycardispsygvyyegfaywgqgt
lvtvsaatttapsvyplvpgcsdtsgssvtlgclvkgyfpepvtvkwnygalssgvrtvs
svlqsgfyslsslvtvpsstwpsqtvicnvahpasktelikriepr

    Sequence, based on observed residues (ATOM records): (download) 
    >3ikcB (B:)
evmlvesggglvqpgnslrlscatsgftftdyymswvrqppgkalewlgfirnkakgytt
eysasvkgrftisrdnsqsilylqmntlraedsatyycardispsygvyyegfaywgqgt
lvtvsaatttapsvyplvpggssvtlgclvkgyfpepvtvkwnygalssgvrtvssvlqs
gfyslsslvtvpsstwpsqtvicnvahpasktelikriepr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ikcC (C:)
divmtqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvqaedlavyyckqsnnlrtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne

    Sequence, based on observed residues (ATOM records): (download) 
    >3ikcC (C:)
ivmtqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastre
sgvpdrftgsgsgtdftltissvqaedlavyyckqsnnlrtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ikcD (D:)
evmlvesggglvqpgnslrlscatsgftftdyymswvrqppgkalewlgfirnkakgytt
eysasvkgrftisrdnsqsilylqmntlraedsatyycardispsygvyyegfaywgqgt
lvtvsaatttapsvyplvpgcsdtsgssvtlgclvkgyfpepvtvkwnygalssgvrtvs
svlqsgfyslsslvtvpsstwpsqtvicnvahpasktelikriepr

    Sequence, based on observed residues (ATOM records): (download) 
    >3ikcD (D:)
evmlvesggglvqpgnslrlscatsgftftdyymswvrqppgkalewlgfirnkakgytt
eysasvkgrftisrdnsqsilylqmntlraedsatyycardispsygvyyegfaywgqgt
lvtvsaatttapsvyplvpggssvtlgclvkgyfpepvtvkwnygalssgvrtvssvlqs
gfyslsslvtvpsstwpsqtvicnvahpasktelikriepr