PDB entry 3i98

View 3i98 on RCSB PDB site
Description: X-ray crystallographic structure of Inorganic Pyrophosphatase at 298K from archaeon Thermococcus thioreducens
Class: hydrolase
Keywords: Pyrophosphatase, beta barrel, HYDROLASE
Deposited on 2009-07-10, released 2009-08-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Th-IPP
    Species: Thermococcus thioreducens [TaxId:277988]
    Database cross-references and differences (RAF-indexed):
    • PDB 3I98 (0-End)
    Domains in SCOPe 2.08: d3i98a_
  • Chain 'B':
    Compound: Th-IPP
    Species: Thermococcus thioreducens [TaxId:277988]
    Database cross-references and differences (RAF-indexed):
    • PDB 3I98 (0-End)
    Domains in SCOPe 2.08: d3i98b_
  • Chain 'C':
    Compound: Th-IPP
    Species: Thermococcus thioreducens [TaxId:277988]
    Database cross-references and differences (RAF-indexed):
    • PDB 3I98 (0-End)
    Domains in SCOPe 2.08: d3i98c_
  • Chain 'D':
    Compound: Th-IPP
    Species: Thermococcus thioreducens [TaxId:277988]
    Database cross-references and differences (RAF-indexed):
    • PDB 3I98 (0-End)
    Domains in SCOPe 2.08: d3i98d_
  • Chain 'E':
    Compound: Th-IPP
    Species: Thermococcus thioreducens [TaxId:277988]
    Database cross-references and differences (RAF-indexed):
    • PDB 3I98
    Domains in SCOPe 2.08: d3i98e_
  • Chain 'F':
    Compound: Th-IPP
    Species: Thermococcus thioreducens [TaxId:277988]
    Database cross-references and differences (RAF-indexed):
    • PDB 3I98 (0-End)
    Domains in SCOPe 2.08: d3i98f_
  • Heterogens: MRD, CA, MPD, ACE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3i98A (A:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3i98A (A:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3i98B (B:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3i98B (B:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3i98C (C:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3i98C (C:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3i98D (D:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3i98D (D:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3i98E (E:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3i98E (E:)
npfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiipq
twyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwkd
isdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3i98F (F:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3i98F (F:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg