PDB entry 3i6l

View 3i6l on RCSB PDB site
Description: Newly identified epitope N1 derived from SARS-CoV N protein complexed with HLA-A*2402
Class: Immune System
Keywords: HLA-A*2402, SARS-CoV, nucleocapsid protein, Disulfide bond, Glycoprotein, Host-virus interaction, Immune response, Membrane, MHC I, Transmembrane, Disease mutation, Glycation, Immunoglobulin domain, Pyrrolidone carboxylic acid, Secreted, Golgi apparatus, Phosphoprotein, Ribonucleoprotein, RNA-binding, Viral nucleoprotein, Virion, Immune System
Deposited on 2009-07-07, released 2010-07-14
The last revision prior to the SCOPe 2.03 freeze date was dated 2010-11-10, with a file datestamp of 2010-11-05.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.217
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'D':
    Compound: HLA class I histocompatibility antigen, A-24 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A, HLAA, MHC class I antigen HLA-A*2402
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, beta-2-microglobulin, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
    Domains in SCOPe 2.03: d3i6le_
  • Chain 'F':
    Compound: Nucleoprotein peptide
    Species: HCoV-SARS, synthetic [TaxId:227859]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3i6lE (E:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'F':
    No sequence available.