PDB entry 3i6l
View 3i6l on RCSB PDB site
Description: Newly identified epitope N1 derived from SARS-CoV N protein complexed with HLA-A*2402
Class: Immune System
Keywords: HLA-A*2402, SARS-CoV, nucleocapsid protein, Disulfide bond, Glycoprotein, Host-virus interaction, Immune response, Membrane, MHC I, Transmembrane, Disease mutation, Glycation, Immunoglobulin domain, Pyrrolidone carboxylic acid, Secreted, Golgi apparatus, Phosphoprotein, Ribonucleoprotein, RNA-binding, Viral nucleoprotein, Virion, Immune System
Deposited on
2009-07-07, released
2010-07-14
The last revision prior to the SCOPe 2.02 freeze date was dated
2010-11-10, with a file datestamp of
2010-11-05.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.217
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'D':
Compound: HLA class I histocompatibility antigen, A-24 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A, HLAA, MHC class I antigen HLA-A*2402
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, beta-2-microglobulin, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- initiating methionine (0)
Domains in SCOPe 2.02: d3i6le_ - Chain 'F':
Compound: Nucleoprotein peptide
Species: HCoV-SARS, synthetic [TaxId:227859]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH