PDB entry 3i6b
View 3i6b on RCSB PDB site
Description: Crystal structure of YrbI lacking the last 8 residues, in complex with Kdo and inorganic phosphate
Class: hydrolase
Keywords: YrbI, KdsC, Kdo, phosphatase, Hydrolase, Lipopolysaccharide biosynthesis, Magnesium
Deposited on
2009-07-06, released
2009-09-01
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.202
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:37762]
Gene: c3958, kdsC, YrbI
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3i6ba_ - Chain 'B':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:37762]
Gene: c3958, kdsC, YrbI
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3i6bb_ - Chain 'C':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:37762]
Gene: c3958, kdsC, YrbI
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3i6bc_ - Chain 'D':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:37762]
Gene: c3958, kdsC, YrbI
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3i6bd_ - Heterogens: MG, PO4, KDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3i6bA (A:)
mskagaslatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgy
gircaltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenv
ayvgddlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkl
Sequence, based on observed residues (ATOM records): (download)
>3i6bA (A:)
slatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgygircal
tsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenvayvgdd
lidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3i6bB (B:)
mskagaslatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgy
gircaltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenv
ayvgddlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkl
Sequence, based on observed residues (ATOM records): (download)
>3i6bB (B:)
aslatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgygirca
ltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenvayvgd
dlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkl
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3i6bC (C:)
mskagaslatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgy
gircaltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenv
ayvgddlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkl
Sequence, based on observed residues (ATOM records): (download)
>3i6bC (C:)
aslatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgygirca
ltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenvayvgd
dlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkl
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3i6bD (D:)
mskagaslatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgy
gircaltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenv
ayvgddlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkl
Sequence, based on observed residues (ATOM records): (download)
>3i6bD (D:)
aslatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgygirca
ltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenvayvgd
dlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkl