PDB entry 3i3m

View 3i3m on RCSB PDB site
Description: Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T
Class: oxidoreductase/DNA
Keywords: beta jellyroll, protein-DNA complex, Dioxygenase, DNA damage, DNA repair, Iron, Metal-binding, Oxidoreductase, OXIDOREDUCTASE-DNA COMPLEX
Deposited on 2009-06-30, released 2009-08-25
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.199
AEROSPACI score: 0.62 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-ketoglutarate-dependent dioxygenase AlkB
    Species: Escherichia coli [TaxId:83333]
    Gene: aidD, alkB, b2212, JW2200
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3i3ma_
  • Chain 'B':
    Compound: DNA (5'-d(p*tp*(me6)p*t)-3')
  • Heterogens: AKG, MN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3i3mA (A:)
mqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwt
thrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklsl
hqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiq
plkagfhpltidcrynltfrqagkkenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >3i3mA (A:)
laagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthrq
gylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslhqdk
depdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplka
gfhpltidcrynltfrqagk

  • Chain 'B':
    No sequence available.