PDB entry 3i1o

View 3i1o on RCSB PDB site
Description: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Deposited on 2009-06-27, released 2009-09-01
The last revision was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3.19 Å
R-factor: 0.197
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 16s rRNA
    Species: Escherichia coli [TaxId:562]
  • Chain 'B':
    Compound: 30S ribosomal protein S2
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 30S ribosomal protein S3
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 30S ribosomal protein S4
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 30S ribosomal protein S5
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 30S ribosomal protein S6
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 30S ribosomal protein S7
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 30S ribosomal protein S8
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 30S ribosomal protein S9
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 30S ribosomal protein S10
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 30S ribosomal protein S11
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 30S ribosomal protein S12
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 30S ribosomal protein S13
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 30S ribosomal protein S14
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 30S ribosomal protein S15
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 30S ribosomal protein S16
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 30S ribosomal protein S17
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 30S ribosomal protein S18
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 30S ribosomal protein S19
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 30S ribosomal protein S20
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 30S ribosomal protein S21
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3i1oB (B:)
matvsmrdmlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnki
asrkgkilfvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletq
sqdgtfdkltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlg
ipvfaivdtnsdpdgvdfvipgnddairavtlylgavaatvregrsqdlasqaeesfvea
e

    Sequence, based on observed residues (ATOM records):
    >3i1oB (B:)
mlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnkiasrkgkil
fvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletqsqdgtfdk
ltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlgipvfaivd
tnsdpdgvdfvipgnddairavtlylgavaatvregrs

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3i1oC (C:)
mgqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierp
aksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsi
tsqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlra
didyntseahttygvigvkvwifkgeilggmaaveqpekpaaqpkkqqrkgrk

    Sequence, based on observed residues (ATOM records):
    >3i1oC (C:)
gqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierpa
ksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsit
sqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlrad
idyntseahttygvigvkvwifkgei

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3i1oD (D:)
marylgpklklsrregtdlflksgvraidtkckieqapgqhgarkprlsdygvqlrekqk
vrriygvlerqfrnyykeaarlkgntgenllallegrldnvvyrmgfgatraearqlvsh
kaimvngrvvniasyqvspndvvsirekakkqsrvkaalelaeqrekptwlevdagkmeg
tfkrkpersdlsadinehlivelysk

    Sequence, based on observed residues (ATOM records):
    >3i1oD (D:)
arylgpklklsrregtdlflksgvraidtkckieqapgqhgarkprlsdygvqlrekqkv
rriygvlerqfrnyykeaarlkgntgenllallegrldnvvyrmgfgatraearqlvshk
aimvngrvvniasyqvspndvvsirekakkqsrvkaalelaeqrekptwlevdagkmegt
fkrkpersdlsadinehlivelysk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3i1oE (E:)
mahiekqagelqekliavnrvsktvkggrifsftaltvvgdgngrvgfgygkarevpaai
qkamekarrnminvalnngtlqhpvkgvhtgsrvfmqpasegtgiiaggamravlevagv
hnvlakaygstnpinvvratidglenmnspemvaakrgksveeilgk

    Sequence, based on observed residues (ATOM records):
    >3i1oE (E:)
elqekliavnrvsktvkggrifsftaltvvgdgngrvgfgygkarevpaaiqkamekarr
nminvalnngtlqhpvkgvhtgsrvfmqpasegtgiiaggamravlevagvhnvlakayg
stnpinvvratidglenmnspemvaakrgk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3i1oF (F:)
mrhyeivfmvhpdqseqvpgmierytaaitgaegkihrledwgrrqlaypinklhkahyv
lmnveapqevidelettfrfndavirsmvmrtkhavteaspmvkakderrerrddfanet
addaeagdseeeeee

    Sequence, based on observed residues (ATOM records):
    >3i1oF (F:)
mrhyeivfmvhpdqseqvpgmierytaaitgaegkihrledwgrrqlaypinklhkahyv
lmnveapqevidelettfrfndavirsmvmrtkhavteas

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3i1oG (G:)
mprrrvigqrkilpdpkfgsellakfvnilmvdgkkstaesivysaletlaqrsgksele
afevalenvrptvevksrrvggstyqvpvevrpvrrnalamrwiveaarkrgdksmalrl
anelsdaaenkgtavkkredvhrmaeankafahyrwlslrsfshqagasskqpalgyln

    Sequence, based on observed residues (ATOM records):
    >3i1oG (G:)
rrrvigqrkilpdpkfgsellakfvnilmvdgkkstaesivysaletlaqrsgkseleaf
evalenvrptvevksrrvggstyqvpvevrpvrrnalamrwiveaarkrgdksmalrlan
elsdaaenkgtavkkredvhrmaeankafa

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3i1oH (H:)
msmqdpiadmltrirngqaankaavtmpssklkvaianvlkeegfiedfkvegdtkpele
ltlkyfqgkavvesiqrvsrpglriykrkdelpkvmaglgiavvstskgvmtdraarqag
lggeiicyva

    Sequence, based on observed residues (ATOM records):
    >3i1oH (H:)
smqdpiadmltrirngqaankaavtmpssklkvaianvlkeegfiedfkvegdtkpelel
tlkyfqgkavvesiqrvsrpglriykrkdelpkvmaglgiavvstskgvmtdraarqagl
ggeiicyva

  • Chain 'I':
    Sequence, based on SEQRES records:
    >3i1oI (I:)
maenqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvek
ldlyitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrk
arrrpqfskr

    Sequence, based on observed residues (ATOM records):
    >3i1oI (I:)
nqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvekldl
yitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrkarr
rpqfskr

  • Chain 'J':
    Sequence, based on SEQRES records:
    >3i1oJ (J:)
mqnqririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvnkd
ardqyeirthlrlvdiveptektvdalmrldlaagvdvqislg

    Sequence, based on observed residues (ATOM records):
    >3i1oJ (J:)
ririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvnkdardq
yeirthlrlvdiveptektvdalmrldlaagvdvqisl

  • Chain 'K':
    Sequence, based on SEQRES records:
    >3i1oK (K:)
makapirarkrvrkqvsdgvahihasfnntivtitdrqgnalgwataggsgfrgsrkstp
faaqvaaercadavkeygiknlevmvkgpgpgrestiralnaagfritnitdvtpiphng
crppkkrrv

    Sequence, based on observed residues (ATOM records):
    >3i1oK (K:)
rkqvsdgvahihasfnntivtitdrqgnalgwataggsgfrgsrkstpfaaqvaaercad
avkeygiknlevmvkgpgpgrestiralnaagfritnitdvtpiphngcrppkkrrv

  • Chain 'L':
    Sequence, based on SEQRES records:
    >3i1oL (L:)
matvnqlvrkprarkvaksnvpaleacpqkrgvctrvytttpkkpnsalrkvcrvrltng
fevtsyiggeghnlqehsvilirggrvkdlpgvryhtvrgaldcsgvkdrkqarskygvk
rpka

    Sequence, based on observed residues (ATOM records):
    >3i1oL (L:)
atvnqlvrkprarkvaksnvpaleacpqkrgvctrvytttpkkpnsalrkvcrvrltngf
evtsyiggeghnlqehsvilirggrvkdlpgvryhtvrgaldcsgvkdrkqarskygvkr
pka

  • Chain 'M':
    Sequence, based on SEQRES records:
    >3i1oM (M:)
mariaginipdhkhavialtsiygvgktrskailaaagiaedvkiselsegqidtlrdev
akfvvegdlrreismsikrlmdlgcyrglrhrrglpvrgqrtktnartrkgprkpikk

    Sequence, based on observed residues (ATOM records):
    >3i1oM (M:)
ariaginipdhkhavialtsiygvgktrskailaaagiaedvkiselsegqidtlrdeva
kfvvegdlrreismsikrlmdlgcyrglrhrrglpvrgqrtktnartrkgprk

  • Chain 'N':
    Sequence, based on SEQRES records:
    >3i1oN (N:)
makqsmkarevkrvaladkyfakraelkaiisdvnasdedrwnavlklqtlprdsspsrq
rnrcrqtgrphgflrkfglsrikvreaamrgeipglkkasw

    Sequence, based on observed residues (ATOM records):
    >3i1oN (N:)
akqsmkarevkrvaladkyfakraelkaiisdvnrwnavlklqtlprdsspsrqrnrcrq
tgrphgflrkfglsrikvreaamrgeipglkkasw

  • Chain 'O':
    Sequence, based on SEQRES records:
    >3i1oO (O:)
mslsteatakivsefgrdandtgstevqvalltaqinhlqghfaehkkdhhsrrgllrmv
sqrrklldylkrkdvarytqlierlglrr

    Sequence, based on observed residues (ATOM records):
    >3i1oO (O:)
slsteatakivsefgrdandtgstevqvalltaqinhlqghfaehkkdhhsrrgllrmvs
qrrklldylkrkdvarytqlierlglrr

  • Chain 'P':
    Sequence, based on SEQRES records:
    >3i1oP (P:)
mvtirlarhgakkrpfyqvvvadsrnarngrfiervgffnpiasekeegtrldldriahw
vgqgatisdrvaalikevnkaa

    Sequence, based on observed residues (ATOM records):
    >3i1oP (P:)
mvtirlarhgakkrpfyqvvvadsrnarngrfiervgffnpiasekeegtrldldriahw
vgqgatisdrvaalikevnk

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >3i1oQ (Q:)
mtdkirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvve
irecrplsktkswtlvrvvekavl

    Sequence, based on observed residues (ATOM records):
    >3i1oQ (Q:)
kirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvveire
crplsktkswtlvrvvekav

  • Chain 'R':
    Sequence, based on SEQRES records:
    >3i1oR (R:)
maryfrrrkfcrftaegvqeidykdiatlknyitesgkivpsritgtrakyqrqlaraik
rarylsllpytdrhq

    Sequence, based on observed residues (ATOM records):
    >3i1oR (R:)
eidykdiatlknyitesgkivpsritgtrakyqrqlaraikrarylsllpytdrh

  • Chain 'S':
    Sequence, based on SEQRES records:
    >3i1oS (S:)
mprslkkgpfidlhllkkvekavesgdkkplrtwsrrstifpnmigltiavhngrqhvpv
fvtdemvghklgefaptrtyrghaadkkakkk

    Sequence, based on observed residues (ATOM records):
    >3i1oS (S:)
rslkkgpfidlhllkkvekavesgdkkplrtwsrrstifpnmigltiavhngrqhvpvfv
tdemvghklgefaptrtyr

  • Chain 'T':
    Sequence, based on SEQRES records:
    >3i1oT (T:)
maniksakkraiqsekarkhnasrrsmmrtfikkvyaaieagdkaaaqkafnemqpivdr
qaakglihknkaarhkanltaqinkla

    Sequence, based on observed residues (ATOM records):
    >3i1oT (T:)
niksakkraiqsekarkhnasrrsmmrtfikkvyaaieagdkaaaqkafnemqpivdrqa
akglihknkaarhkanltaqinkla

  • Chain 'U':
    Sequence, based on SEQRES records:
    >3i1oU (U:)
mpvikvrenepfdvalrrfkrscekagvlaevrrrefyekptterkrakasavkrhakkl
arenarrtrly

    Sequence, based on observed residues (ATOM records):
    >3i1oU (U:)
ikvrenepfdvalrrfkrscekagvlaevrrrefyekptterkrakasavk