PDB entry 3hzr

View 3hzr on RCSB PDB site
Description: Tryptophanyl-tRNA synthetase homolog from Entamoeba histolytica
Class: ligase
Keywords: apo tRNA-ligase, Structural Genomics, Medical Structural Genomics of Pathogenic Protozoa, MSGPP, LIGASE
Deposited on 2009-06-24, released 2009-07-28
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.229
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Entamoeba histolytica [TaxId:5759]
    Gene: 58.m00157
    Database cross-references and differences (RAF-indexed):
    • PDB 3HZR (Start-385)
    Domains in SCOPe 2.05: d3hzra_
  • Chain 'B':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Entamoeba histolytica [TaxId:5759]
    Gene: 58.m00157
    Database cross-references and differences (RAF-indexed):
    • PDB 3HZR (Start-385)
    Domains in SCOPe 2.05: d3hzrb_
  • Chain 'C':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Entamoeba histolytica [TaxId:5759]
    Gene: 58.m00157
    Database cross-references and differences (RAF-indexed):
    • PDB 3HZR (Start-385)
    Domains in SCOPe 2.05: d3hzrc_
  • Chain 'D':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Entamoeba histolytica [TaxId:5759]
    Gene: 58.m00157
    Database cross-references and differences (RAF-indexed):
    • PDB 3HZR (Start-385)
    Domains in SCOPe 2.05: d3hzrd_
  • Chain 'E':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Entamoeba histolytica [TaxId:5759]
    Gene: 58.m00157
    Database cross-references and differences (RAF-indexed):
    • PDB 3HZR (Start-385)
    Domains in SCOPe 2.05: d3hzre_
  • Chain 'F':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Entamoeba histolytica [TaxId:5759]
    Gene: 58.m00157
    Database cross-references and differences (RAF-indexed):
    • PDB 3HZR (Start-385)
    Domains in SCOPe 2.05: d3hzrf_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3hzrA (A:)
    mahhhhhhqtqtpsqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhyls
    rgvflaeksldkflddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiq
    ilddikvlnreatineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislveka
    taynvvqpffnfeysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsi
    idqiattlnfiqptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsgg
    rntteehkklggqcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkd
    fivaydakkkpittaylkayisktkf
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hzrA (A:)
    psqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhylsrgvflaeksldk
    flddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiqilddikvlnrea
    tineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislvekataynvvqpffnf
    eysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsiidqiattlnfiq
    ptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsggrntteehkklgg
    qcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkdfivaydakkkpi
    ttaylkayisktkf
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3hzrB (B:)
    mahhhhhhqtqtpsqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhyls
    rgvflaeksldkflddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiq
    ilddikvlnreatineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislveka
    taynvvqpffnfeysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsi
    idqiattlnfiqptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsgg
    rntteehkklggqcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkd
    fivaydakkkpittaylkayisktkf
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hzrB (B:)
    psqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhylsrgvflaeksldk
    flddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiqilddikvlnrea
    tineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislvekataynvvqpffnf
    eysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsiidqiattlnfiq
    ptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsggrntteehkklgg
    qcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkdfivaydakkkpi
    ttaylkayisktkf
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3hzrC (C:)
    mahhhhhhqtqtpsqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhyls
    rgvflaeksldkflddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiq
    ilddikvlnreatineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislveka
    taynvvqpffnfeysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsi
    idqiattlnfiqptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsgg
    rntteehkklggqcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkd
    fivaydakkkpittaylkayisktkf
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hzrC (C:)
    psqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhylsrgvflaeksldk
    flddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiqilddikvlnrea
    tineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislvekataynvvqpffnf
    eysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsiidqiattlnfiq
    ptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsggrntteehkklgg
    qcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkdfivaydakkkpi
    ttaylkayisktkf
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3hzrD (D:)
    mahhhhhhqtqtpsqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhyls
    rgvflaeksldkflddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiq
    ilddikvlnreatineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislveka
    taynvvqpffnfeysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsi
    idqiattlnfiqptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsgg
    rntteehkklggqcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkd
    fivaydakkkpittaylkayisktkf
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hzrD (D:)
    psqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhylsrgvflaeksldk
    flddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiqilddikvlnrea
    tineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislvekataynvvqpffnf
    eysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsiidqiattlnfiq
    ptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsggrntteehkklgg
    qcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkdfivaydakkkpi
    ttaylkayisktkf
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3hzrE (E:)
    mahhhhhhqtqtpsqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhyls
    rgvflaeksldkflddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiq
    ilddikvlnreatineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislveka
    taynvvqpffnfeysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsi
    idqiattlnfiqptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsgg
    rntteehkklggqcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkd
    fivaydakkkpittaylkayisktkf
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hzrE (E:)
    psqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhylsrgvflaeksldk
    flddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiqilddikvlnrea
    tineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislvekataynvvqpffnf
    eysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsiidqiattlnfiq
    ptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsggrntteehkklgg
    qcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkdfivaydakkkpi
    ttaylkayisktkf
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3hzrF (F:)
    mahhhhhhqtqtpsqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhyls
    rgvflaeksldkflddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiq
    ilddikvlnreatineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislveka
    taynvvqpffnfeysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsi
    idqiattlnfiqptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsgg
    rntteehkklggqcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkd
    fivaydakkkpittaylkayisktkf
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hzrF (F:)
    psqllqsfttrttdynqlinsvginaitpqqiqrieklsgkaphhylsrgvflaeksldk
    flddveakkptfifiqkypqkevaleeyitlefarylqdafniqviiqilddikvlnrea
    tineaskmsndlmkyilafgfnedktfiytdyqyfgkmyrtislvekataynvvqpffnf
    eysdnigklaspsimtasmfsqsyshffssparclvldsiknvqfhsiidqiattlnfiq
    ptvlfhkmvpllsgvtkfdipsdhnsillsdnakqverkinklafsggrntteehkklgg
    qcdidvsfqllnifssdnaqvkdveekyskgellsgelkkivsasmkdfivaydakkkpi
    ttaylkayisktkf