PDB entry 3hqv

View 3hqv on RCSB PDB site
Description: Low resolution, molecular envelope structure of type I collagen in situ determined by fiber diffraction. Single type I collagen molecule, rigid body refinement
Class: structural protein, contractile protein
Keywords: NATIVE, IN SITU, Molecular envelope, TRIPLE-helical, SUPERMOLECULAR, supramolecular, PACKING STRUCTURE, STRUCTURAL PROTEIN/CONTRACTILE PROTEIN COMPLEX, Collagen, Extracellular matrix, Glycoprotein, Hydroxylation, Pyrrolidone carboxylic acid, Secreted, STRUCTURAL PROTEIN, CONTRACTILE PROTEIN
Deposited on 2009-06-08, released 2009-07-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-07-14, with a file datestamp of 2009-07-10.
Experiment type: FIBER
Resolution: 5.16 Å
R-factor: 0.066
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Collagen alpha-1(I) chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hqva_
  • Chain 'B':
    Compound: Collagen alpha-2(I) chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hqvb_
  • Chain 'C':
    Compound: Collagen alpha-1(I) chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hqvc_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3hqvA (A:)
qmsygydeksagvsvpgpmgpsgprglpgppgapgpqgfqgppgepgepggsgpmgppgp
pgppgkngddgeagkpgrpgergppgpqgarglpgtaglpgmkghrgfsgldgakgdtgp
agpkgepgspgengtpgqmgprglpgergrpgppgtagargndgavgaagppgptgptgp
pgfpgaagakgeagpqgargsegpqgvrgepgppgpagaagpagnpgadgqpgakganga
pgiagapgfpgargpsgpqgpsgapgpkgtsgepgapgnkgdtgakgepgpagvqgppgp
ageegkrgargepgpsglpgppgerggpgsrgfpgadgvagpkgpsgergspgpagpkgs
pgeagrpgeaglpgakgltgspgspgpdgktgppgpagqdgrpgpagppgargqagvmgf
pgpkgtagepgkagergvpgppgavgpagkdgeagaqgapgpagpagergeqgpagspgf
qglpgpagppgeagkpgeqgvpgdlgapgpsgargergfpgergvqgppgpagprgnnga
pgndgakgdtgapgapgsqgapglqgmpgergaaglpgpkgdrgdagpkgadgspgkdgv
rgltgpigppgpagapgdkgeagpsgpagptgargapgdrgeagppgpagfagppgadgq
pgakgepgdtgvkgdagppgpagpagppgpignvgapgpkgsrgaagppgatgfpgaagr
vgppgpsgnagppgppgpvgkeggkgprgetgpagrpgevgppgppgpagekgspgadgp
agspgtpgpqgiagqrgvvglpgqrgkrgfpglpgpsgepgkqgpsgasgergppgpmgp
pglagppgesgregspgaegspgrdgapgakgdrgetgpagppgapgapgapgpvgpagk
ngdrgetgpagpagpigpagargpagpqgprgdkgetgeqgdrgikghrgfsglqgppgs
pgspgeqgpsgasgpagprgppgsagspgkdglnglpgpigppgprgrtgdsgpagppgp
pgppgppgppsggydfsflpqppqeksqdggryyra

    Sequence, based on observed residues (ATOM records): (download) 
    >3hqvA (A:)
qmsygydeksagvsvpgpmgpsgprglpgppgapgpqgfqgppgepgepggsgpmgppgp
pgppgkngddgeagkpgrpgergppgpqgarglpgtaglpgmkghrgfsgldgakgdtgp
agpkgepgspgengtpgqmgprglpgergrpgppgtagargndgavgaagppgptgptgp
pgfpgaagakgeagpqgargsegpqgvrgepgppgpagaagpagnpgadgqpgakganga
pgiagapgfpgargpsgpqgpsgapgpkgtsgepgapgnkgdtgakgepgpagvqgppgp
ageegkrgargepgpsglpgppgerggpgsrgfpgadgvagpkgpsgergspgpagpkgs
pgeagrpgeaglpgakgltgspgspgpdgktgppgpagqdgrpgpagppgargqagvmgf
pgpkgtagepgkagergvpgppgavgpagkdgeagaqgapgpagpagergeqgpagspgf
qglpgpagppgeagkpgeqgvpgdlgapgpsgargergfpgergvqgppgpagprgnnga
pgndgakgdtgapgapgsqgapglqgmpgergaaglpgpkgdrgdagpkgadgspgkdgv
rgltgpigppgpagapgdkgeagpsgpagptgargapgdrgeagppgpagfagppgadgq
pgakgepgdtgvkgdagppgpagpagppgpignvgapgpkgsrgaagppgatgfpgaagr
vgppgpsgnagppgppgpvgkeggkgprgetgpagrpgevgppgppgpagekgspgadgp
agspgtpgpqgiagqrgvvglpgqrgkrgfpglpgpsgepgkqgpsgasgergppgpmgp
pglagppgesgregspgaegspgrdgapgakgdrgetgpagppgapgapgapgpvgpagk
ngdrgetgpagpagpigpagargpagpqgprgdkgetgeqgdrgikghrgfsglqgppgs
pgspgeqgpsgasgpagprgppgsagspgkdglnglpgpigppgprgrtgdsgpagppgp
pgppgppgppsggydfsflpqppqeksqdggryy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3hqvB (B:)
qysdkgvsagpgpmglmgprgppgavgapgpqgfqgpagepgepgqtgpagsrgpagppg
kagedghpgkpgrpgergvvgpqgargfpgtpglpgfkgirghngldglkgqpgaqgvkg
epgapgengtpgqagarglpgergrvgapgpagargsdgsvgpvgpagpigsagppgfpg
apgpkgelgpvgnpgpagpagprgeaglpglsgpvgppgnpgangltgakgatglpgvag
apglpgprgipgpvgaagatgprglvgepgpagskgetgnkgepgsagaqgppgpsgeeg
krgspgepgsagpagppglrgspgsrglpgadgragvmgppgnrgstgpagvrgpngdag
rpgepglmgprglpgspgnvgpagkegpvglpgidgrpgpigpagprgeagnigfpgpkg
psgdpgkpgekghpglagargapgpdgnngaqgppgpqgvqggkgeqgpagppgfqglpg
psgtagevgkpgerglpgefglpgpagprgergppgesgaagpsgpigirgpsgapgpdg
nkgeagavgapgsagasgpgglpgergaagipggkgekgetglrgeignpgrdgargapg
aigapgpagasgdrgeagaagpsgpagprgspgergevgpagpngfagpagsagqpgakg
ekgtkgpkgengivgptgpvgaagpsgpngppgpagsrgdggppgmtgfpgaagrtgppg
psgitgppgppgaagkegirgprgdqgpvgrtgeigasgppgfagekgpsgepgttgppg
tagpqgllgapgilglpgsrgergqpgiagalgepgplgiagppgargppgavgspgvng
apgeagrdgnpgsdgppgrdgqpghkgergypgnigptgaagapgphgsvgpagkhgnrg
epgpagsvgpvgavgprgpsgpqgirgdkgepgdkgarglpglkghnglqglpglaglhg
dqgapgpvgpagprgpagpsgpigkdgrsghpgpvgpagvrgsqgsqgpagppgppgppg
ppgvsggg

    Sequence, based on observed residues (ATOM records): (download) 
    >3hqvB (B:)
sdkgvsagpgpmglmgprgppgavgapgpqgfqgpagepgepgqtgpagsrgpagppgka
gedghpgkpgrpgergvvgpqgargfpgtpglpgfkgirghngldglkgqpgaqgvkgep
gapgengtpgqagarglpgergrvgapgpagargsdgsvgpvgpagpigsagppgfpgap
gpkgelgpvgnpgpagpagprgeaglpglsgpvgppgnpgangltgakgatglpgvagap
glpgprgipgpvgaagatgprglvgepgpagskgetgnkgepgsagaqgppgpsgeegkr
gspgepgsagpagppglrgspgsrglpgadgragvmgppgnrgstgpagvrgpngdagrp
gepglmgprglpgspgnvgpagkegpvglpgidgrpgpigpagprgeagnigfpgpkgps
gdpgkpgekghpglagargapgpdgnngaqgppgpqgvqggkgeqgpagppgfqglpgps
gtagevgkpgerglpgefglpgpagprgergppgesgaagpsgpigirgpsgapgpdgnk
geagavgapgsagasgpgglpgergaagipggkgekgetglrgeignpgrdgargapgai
gapgpagasgdrgeagaagpsgpagprgspgergevgpagpngfagpagsagqpgakgek
gtkgpkgengivgptgpvgaagpsgpngppgpagsrgdggppgmtgfpgaagrtgppgps
gitgppgppgaagkegirgprgdqgpvgrtgeigasgppgfagekgpsgepgttgppgta
gpqgllgapgilglpgsrgergqpgiagalgepgplgiagppgargppgavgspgvngap
geagrdgnpgsdgppgrdgqpghkgergypgnigptgaagapgphgsvgpagkhgnrgep
gpagsvgpvgavgprgpsgpqgirgdkgepgdkgarglpglkghnglqglpglaglhgdq
gapgpvgpagprgpagpsgpigkdgrsghpgpvgpagvrgsqgsqgpagppgppgppgpp
gvsggg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3hqvC (C:)
qmsygydeksagvsvpgpmgpsgprglpgppgapgpqgfqgppgepgepggsgpmgppgp
pgppgkngddgeagkpgrpgergppgpqgarglpgtaglpgmkghrgfsgldgakgdtgp
agpkgepgspgengtpgqmgprglpgergrpgppgtagargndgavgaagppgptgptgp
pgfpgaagakgeagpqgargsegpqgvrgepgppgpagaagpagnpgadgqpgakganga
pgiagapgfpgargpsgpqgpsgapgpkgtsgepgapgnkgdtgakgepgpagvqgppgp
ageegkrgargepgpsglpgppgerggpgsrgfpgadgvagpkgpsgergspgpagpkgs
pgeagrpgeaglpgakgltgspgspgpdgktgppgpagqdgrpgpagppgargqagvmgf
pgpkgtagepgkagergvpgppgavgpagkdgeagaqgapgpagpagergeqgpagspgf
qglpgpagppgeagkpgeqgvpgdlgapgpsgargergfpgergvqgppgpagprgnnga
pgndgakgdtgapgapgsqgapglqgmpgergaaglpgpkgdrgdagpkgadgspgkdgv
rgltgpigppgpagapgdkgeagpsgpagptgargapgdrgeagppgpagfagppgadgq
pgakgepgdtgvkgdagppgpagpagppgpignvgapgpkgsrgaagppgatgfpgaagr
vgppgpsgnagppgppgpvgkeggkgprgetgpagrpgevgppgppgpagekgspgadgp
agspgtpgpqgiagqrgvvglpgqrgkrgfpglpgpsgepgkqgpsgasgergppgpmgp
pglagppgesgregspgaegspgrdgapgakgdrgetgpagppgapgapgapgpvgpagk
ngdrgetgpagpagpigpagargpagpqgprgdkgetgeqgdrgikghrgfsglqgppgs
pgspgeqgpsgasgpagprgppgsagspgkdglnglpgpigppgprgrtgdsgpagppgp
pgppgppgppsggydfsflpqppqeksqdggryyra

    Sequence, based on observed residues (ATOM records): (download) 
    >3hqvC (C:)
qmsygydeksagvsvpgpmgpsgprglpgppgapgpqgfqgppgepgepggsgpmgppgp
pgppgkngddgeagkpgrpgergppgpqgarglpgtaglpgmkghrgfsgldgakgdtgp
agpkgepgspgengtpgqmgprglpgergrpgppgtagargndgavgaagppgptgptgp
pgfpgaagakgeagpqgargsegpqgvrgepgppgpagaagpagnpgadgqpgakganga
pgiagapgfpgargpsgpqgpsgapgpkgtsgepgapgnkgdtgakgepgpagvqgppgp
ageegkrgargepgpsglpgppgerggpgsrgfpgadgvagpkgpsgergspgpagpkgs
pgeagrpgeaglpgakgltgspgspgpdgktgppgpagqdgrpgpagppgargqagvmgf
pgpkgtagepgkagergvpgppgavgpagkdgeagaqgapgpagpagergeqgpagspgf
qglpgpagppgeagkpgeqgvpgdlgapgpsgargergfpgergvqgppgpagprgnnga
pgndgakgdtgapgapgsqgapglqgmpgergaaglpgpkgdrgdagpkgadgspgkdgv
rgltgpigppgpagapgdkgeagpsgpagptgargapgdrgeagppgpagfagppgadgq
pgakgepgdtgvkgdagppgpagpagppgpignvgapgpkgsrgaagppgatgfpgaagr
vgppgpsgnagppgppgpvgkeggkgprgetgpagrpgevgppgppgpagekgspgadgp
agspgtpgpqgiagqrgvvglpgqrgkrgfpglpgpsgepgkqgpsgasgergppgpmgp
pglagppgesgregspgaegspgrdgapgakgdrgetgpagppgapgapgapgpvgpagk
ngdrgetgpagpagpigpagargpagpqgprgdkgetgeqgdrgikghrgfsglqgppgs
pgspgeqgpsgasgpagprgppgsagspgkdglnglpgpigppgprgrtgdsgpagppgp
pgppgppgppsggydfsflpqppqeksqdggryy