PDB entry 3hp6

View 3hp6 on RCSB PDB site
Description: crystal structure of fragment dna polymerase i from bacillus stearothermophilus f710y mutant bound to g:t mismatch
Deposited on 2009-06-03, released 2010-06-23
The last revision was dated 2021-10-13, with a file datestamp of 2021-10-08.
Experiment type: XRAY
Resolution: 1.81 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I, large fragment
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: DPO1
    Database cross-references and differences (RAF-indexed):
    • PDB 3HP6 (0-579)
      • engineered mutation (301)
      • engineered mutation (413)
  • Chain 'B':
    Compound: 5'-d(*cp*gp*ap*tp*cp*ap*cp*gp*(ddg))-3'
    Species: synthetic, synthetic
  • Chain 'C':
    Compound: 5'-d(*ap*cp*gp*cp*cp*gp*tp*gp*ap*tp*cp*g)-3'
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: DNA polymerase I, large fragment
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: DPO1
    Database cross-references and differences (RAF-indexed):
    • PDB 3HP6 (0-579)
      • engineered mutation (301)
      • engineered mutation (413)
  • Chain 'E':
    Compound: 5'-d(*cp*gp*ap*tp*cp*ap*cp*gp*(ddg))-3'
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: 5'-d(*ap*cp*gp*cp*cp*gp*tp*gp*ap*tp*cp*g)-3'
    Species: synthetic, synthetic
  • Heterogens: SO4, MG, D3T, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >3hp6A (A:)
akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
patkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >3hp6D (D:)
akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
patkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.