PDB entry 3hm9

View 3hm9 on RCSB PDB site
Description: Crystal structure of T. thermophilus Argonaute complexed with DNA guide strand and 19-nt RNA target strand
Deposited on 2009-05-28, released 2009-10-06
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.239
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:262724]
    Gene: TT_P0026
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 5'-d(p*tp*gp*ap*gp*gp*tp*ap*gp*tp*ap*gp*gp*tp*tp*gp*tp*ap*tp*ap*gp*t)-3'
  • Chain 'Y':
    Compound: 5'-r(*up*ap*up*ap*cp*ap*ap*cp*cp*up*ap*cp*up*ap*cp*cp*up*cp*g)-3'
  • Heterogens: MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3hm9A (A:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >3hm9A (A:)
hlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrmgd
glaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlr
rlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleaw
laqghplpkrvrnaydrrtwellrlgeedpkelslldyhaskgrlqgreggrvawvadpi
phltgllvpvltllslpweerrrrtreiaswigrrlglgtpeavraqayrlsipklmgrr
avskpadalrvgfyraqetalallrldgaqgwpeflrrallrafgasgaslrlhtlhahp
sqglafrealrkakeegvqavlvltppmawedrnrlkalllreglpsqilnvplreeerh
rwenallgllakaglqvvalsgaypaelavgfdaggresfrfggaacavggdghllwtlp
eaqageripqevvwdlleetlwafrrkagrlpsrvlllrdgrvpqdefalalealaregi
aydlvsvrksgggrvypvqgrladglyvpledktfllltvgtprplklvheagdtpleal
ahqifhltrlypasgfafprlpaplhladrlvkevgrlgirhlkevdreklffv

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.