PDB entry 3hh9

View 3hh9 on RCSB PDB site
Description: Crystal Structure of Spermidine Synthase from E. coli.
Class: transferase
Keywords: Spermidine synthase, aminopropyltransferase, polyamine synthase, Rossmann fold, Polyamine biosynthesis, Spermidine biosynthesis, Transferase
Deposited on 2009-05-15, released 2010-01-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-03-23, with a file datestamp of 2010-03-19.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.268
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: speE, b0121, JW0117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hh9a_
  • Chain 'B':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: speE, b0121, JW0117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hh9b_
  • Chain 'C':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: speE, b0121, JW0117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hh9c_
  • Chain 'D':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: speE, b0121, JW0117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hh9d_
  • Chain 'E':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: speE, b0121, JW0117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hh9e_
  • Chain 'F':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: speE, b0121, JW0117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hh9f_
  • Chain 'G':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: speE, b0121, JW0117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hh9g_
  • Chain 'H':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: speE, b0121, JW0117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3hh9h_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3hh9A (A:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3hh9A (A:)
qwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmth
vpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnagsy
ddprfklviddgvnqtsqtfdviisdcftsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflkcryynp
aihtaafalpqylqdalasq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3hh9B (B:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3hh9B (B:)
qwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyhe
mmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhn
agsyddprfklvivnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarlkcryynpa
ihtaafalpqylqda

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3hh9C (C:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3hh9C (C:)
qwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmth
vpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnagsy
ddprfklviddgvnqtsqtfdviisdcftsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflkcryynp
aihtaafalpqylqdalasq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3hh9D (D:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3hh9D (D:)
qwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyhe
mmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhn
agsyddprfklvivnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarlkcryynpa
ihtaafalpqylqda

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3hh9E (E:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3hh9E (E:)
qwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmth
vpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnagsy
ddprfklviddgvnqtsqtfdviisdcftsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflkcryynp
aihtaafalpqylqdalasq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3hh9F (F:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3hh9F (F:)
qwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyhe
mmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhn
agsyddprfklvivnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarlkcryynpa
ihtaafalpqylqda

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3hh9G (G:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3hh9G (G:)
qwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmth
vpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnagsy
ddprfklviddgvnqtsqtfdviisdcftsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflkcryynp
aihtaafalpqylqdalasq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3hh9H (H:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3hh9H (H:)
qwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyhe
mmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhn
agsyddprfklvivnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarlkcryynpa
ihtaafalpqylqda