PDB entry 3hed

View 3hed on RCSB PDB site
Description: Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion
Deposited on 2009-05-08, released 2009-06-23
The last revision was dated 2009-09-08, with a file datestamp of 2009-09-04.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.232
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase kappa
    Species: Homo sapiens [TaxId:9606]
    Gene: DINB1, POLK
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA polymerase kappa
    Species: Homo sapiens [TaxId:9606]
    Gene: DINB1, POLK
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: DNA (5'-d(*gp*g*gp*gp*gp*ap*ap*gp*gp*ap*cp*tp*(doc))-3')
  • Chain 'Q':
    Compound: DNA (5'-d(*gp*g*gp*gp*gp*ap*ap*gp*gp*ap*cp*tp*(doc))-3')
  • Chain 'T':
    Compound: DNA (5'-d(*c*cp*tp*ap*(8og)p*gp*ap*gp*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3')
  • Chain 'U':
    Compound: DNA (5'-d(*c*cp*tp*ap*(8og)p*gp*ap*gp*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3')
  • Heterogens: ATP, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3hedA (A:)
mglndnkagmegldkekinkiimeatkgsrfygnelkkekqvnqrienmmqqkaqitsqq
lrkaqlqvdrfameleqsrnlsntivhidmdafyaavemrdnpelkdkpiavgsmsmlst
snyharrfgvraampgfiakrlcpqliivppnfdkyravskevkeiladydpnfmamsld
eaylnitkhleerqnwpedkrryfikmgssvendnpgkevnklsehersispllfeesps
dvqppgdpfqvnfeeqnnpqilqnsvvfgtsaqevvkeirfrieqkttltasagiapntm
lakvcsdknkpngqyqilpnrqavmdfikdlpirkvsgigkvtekmlkalgiitctelyq
qrallsllfsetswhyflhislglgsthltrdgerksmsvertfseinkaeeqyslcqel
cselaqdlqkerlkgrtvtiklknvnfevktrastvssvvstaeeifaiakellkteida
dfphplrlrlmgvrissfpneedrkhqq

    Sequence, based on observed residues (ATOM records):
    >3hedA (A:)
kagmegldkekinkiimeatkgsrfygnelkkekqvnqrienmmqqkaqitsqqlrkaql
qvdrfameleqsrnlsntivhidmdafyaavemrdnpelkdkpiavgsmsmlstsnyhar
rfgvraampgfiakrlcpqliivppnfdkyravskevkeiladydpnfmamsldeaylni
tkhleerqnwpedkrryfikqnsvvfgtsaqevvkeirfrieqkttltasagiapntmla
kvcsdknkpngqyqilpnrqavmdfikdlpirkvsgigkvtekmlkalgiitctelyqqr
allsllfsetswhyflhislglgsthltrdgerksmsvertfseinkaeeqyslcqelcs
elaqdlqkerlkgrtvtiklknvnfevktrastvssvvstaeeifaiakellkteidadf
phplrlrlmgvrissfpn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3hedB (B:)
mglndnkagmegldkekinkiimeatkgsrfygnelkkekqvnqrienmmqqkaqitsqq
lrkaqlqvdrfameleqsrnlsntivhidmdafyaavemrdnpelkdkpiavgsmsmlst
snyharrfgvraampgfiakrlcpqliivppnfdkyravskevkeiladydpnfmamsld
eaylnitkhleerqnwpedkrryfikmgssvendnpgkevnklsehersispllfeesps
dvqppgdpfqvnfeeqnnpqilqnsvvfgtsaqevvkeirfrieqkttltasagiapntm
lakvcsdknkpngqyqilpnrqavmdfikdlpirkvsgigkvtekmlkalgiitctelyq
qrallsllfsetswhyflhislglgsthltrdgerksmsvertfseinkaeeqyslcqel
cselaqdlqkerlkgrtvtiklknvnfevktrastvssvvstaeeifaiakellkteida
dfphplrlrlmgvrissfpneedrkhqq

    Sequence, based on observed residues (ATOM records):
    >3hedB (B:)
ndnkagmegldkekinkiimeatkgsrfygnelkkekqvnqrienmmqqkaqitsqqlrk
aqlqvdrfameleqsrnlsntivhidmdafyaavemrdnpelkdkpiavgsmsmlstsny
harrfgvraampgfiakrlcpqliivppnfdkyravskevkeiladydpnfmamsldeay
lnitkhleerqnwpedkrryfivvfgtsaqevvkeirfrieqkttltasagiapntmlak
vcsdknkpngqyqilpnrqavmdfikdlpirkvsgigkvtekmlkalgiitctelyqqra
llsllfsetswhyflhislglgsthltrdgerksmsvertfseinkaeeqyslcqelcse
laqdlqkerlkgrtvtiklknvnfevktrastvssvvstaeeifaiakellkteidadfp
hplrlrlmgvrissfpn

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    No sequence available.