PDB entry 3hdy

View 3hdy on RCSB PDB site
Description: Crystal Structure of UDP-galactopyranose mutase (reduced form) in complex with substrate
Deposited on 2009-05-07, released 2009-12-29
The last revision was dated 2009-12-29, with a file datestamp of 2009-12-24.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.238
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GDU, FAD, FDA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3hdyA (A:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyA (A:)
qeskgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygp
hifhtnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqvee
ffasvaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtn
rdnryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaf
fdfcygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvy
eypraegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatf
rrlqg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3hdyB (B:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyB (B:)
gfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifh
tnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffas
vaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnr
yfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfc
ygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypr
aegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrlq
g

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3hdyC (C:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyC (C:)
livgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifhtnsk
dvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffasvaek
veqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnryfad
tyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfcygkl
pyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypraegd
pyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqal

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3hdyD (D:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyD (D:)
gfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifh
tnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffas
vaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnr
yfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfc
ygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypr
aegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrlq
g

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3hdyE (E:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyE (E:)
gfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifh
tnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffas
vaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnr
yfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfc
ygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypr
aegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrlq
g

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3hdyF (F:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyF (F:)
kgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphif
htnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffa
svaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdn
ryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdf
cygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeyp
raegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrl
qg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3hdyG (G:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyG (G:)
gfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifh
tnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffas
vaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnr
yfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfc
ygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypr
aegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrlq

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3hdyH (H:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyH (H:)
kgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphif
htnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffa
svaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdn
ryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdf
cygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeyp
raegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrl
q

  • Chain 'I':
    Sequence, based on SEQRES records:
    >3hdyI (I:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyI (I:)
gfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifh
tnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffas
vaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnr
yfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfc
ygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypr
aegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrlq
g

  • Chain 'J':
    Sequence, based on SEQRES records:
    >3hdyJ (J:)
mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae

    Sequence, based on observed residues (ATOM records):
    >3hdyJ (J:)
fdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifht
nskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffasv
aekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnry
fadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfcy
gklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypra
egdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrlq