PDB entry 3hdq

View 3hdq on RCSB PDB site
Description: Crystal structure of UDP-galactopyranose mutase (oxidized form) in complex with substrate
Deposited on 2009-05-07, released 2009-12-29
The last revision was dated 2009-12-29, with a file datestamp of 2009-12-24.
Experiment type: XRAY
Resolution: 2.36 Å
R-factor: 0.179
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: udp-galactopyranose mutase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_A0367, DR_AO367
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GDU, FAD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3hdqA (A:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqA (A:)
    qeskgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygp
    hifhtnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqvee
    ffasvaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtn
    rdnryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaf
    fdfcygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvy
    eypraegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatf
    rrlqg
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3hdqB (B:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqB (B:)
    skgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphi
    fhtnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeff
    asvaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrd
    nryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffd
    fcygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyey
    praegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrr
    lqgq
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3hdqC (C:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqC (C:)
    kgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphif
    htnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffa
    svaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdn
    ryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdf
    cygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeyp
    raegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrl
    q
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3hdqD (D:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqD (D:)
    gfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifh
    tnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffas
    vaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnr
    yfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfc
    ygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypr
    aegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrlq
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3hdqE (E:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqE (E:)
    eskgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygph
    ifhtnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveef
    fasvaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnr
    dnryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaff
    dfcygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvye
    ypraegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfr
    rlqg
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3hdqF (F:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqF (F:)
    kgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphif
    htnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffa
    svaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdn
    ryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdf
    cygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeyp
    raegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrl
    qgq
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3hdqG (G:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqG (G:)
    skgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphi
    fhtnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeff
    asvaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrd
    nryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffd
    fcygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyey
    praegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrr
    lqg
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3hdqH (H:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqH (H:)
    skgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphi
    fhtnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeff
    asvaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrd
    nryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffd
    fcygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyey
    praegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrr
    lqgq
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >3hdqI (I:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqI (I:)
    skgfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphi
    fhtnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeff
    asvaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrd
    nryfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffd
    fcygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyey
    praegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrr
    lqg
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >3hdqJ (J:)
    mpmtdlpsavtnerteqtnttneqqeskgfdylivgagfagsvlaerlassgqrvlivdr
    rphiggnaydcyddagvlihpygphifhtnskdvfeylsrftewrpyqhrvlasvdgqll
    pipinldtvnrlyglnltsfqveeffasvaekveqvrtsedvvvskvgrdlynkffrgyt
    rkqwgldpseldasvtarvptrtnrdnryfadtyqamplhgytrmfqnmlsspnikvmln
    tdyreiadfipfqhmiytgpvdaffdfcygklpyrslefrhethdteqllptgtvnypnd
    yaytrvsefkhitgqrhhqtsvvyeypraegdpyypvprpenaelykkyealadaaqdvt
    fvgrlatyryynmdqvvaqalatfrrlqgqpeqgnae
    

    Sequence, based on observed residues (ATOM records):
    >3hdqJ (J:)
    gfdylivgagfagsvlaerlassgqrvlivdrrphiggnaydcyddagvlihpygphifh
    tnskdvfeylsrftewrpyqhrvlasvdgqllpipinldtvnrlyglnltsfqveeffas
    vaekveqvrtsedvvvskvgrdlynkffrgytrkqwgldpseldasvtarvptrtnrdnr
    yfadtyqamplhgytrmfqnmlsspnikvmlntdyreiadfipfqhmiytgpvdaffdfc
    ygklpyrslefrhethdteqllptgtvnypndyaytrvsefkhitgqrhhqtsvvyeypr
    aegdpyypvprpenaelykkyealadaaqdvtfvgrlatyryynmdqvvaqalatfrrlq
    g