PDB entry 3hdi

View 3hdi on RCSB PDB site
Description: Crystal structure of Bacillus halodurans metallo peptidase
Deposited on 2009-05-07, released 2009-12-08
The last revision was dated 2009-12-08, with a file datestamp of 2009-12-04.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.196
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Processing protease
    Species: Bacillus halodurans C-125 [TaxId:272558]
    Gene: BH2405
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KA85 (Start-412)
      • expression tag (413-414)
  • Chain 'B':
    Compound: Processing protease
    Species: Bacillus halodurans C-125 [TaxId:272558]
    Gene: BH2405
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KA85 (Start-412)
      • expression tag (413-414)
  • Chain 'C':
    Compound: synthetic peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3HDI (Start-16)
  • Chain 'D':
    Compound: synthetic peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3HDI (0-16)
  • Heterogens: CO, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3hdiA (A:)
mintmtldngvriitekmstvrsvsigiwvgtgsryesaeengishflehmffkgtntrs
aqeiaeffdsiggqvnaftskeytcyyakvlddhagqaidtlsdmffhstfqkeeleker
kvvfeeikmvddtpddivhdllssatygkhslgypilgtvetlnsfnegmlrhymdrfyt
gdyvvisvagnvhdelidkiketfsqvkpttynyqgekpmflpnrivrkketeqahlclg
ypglpigdkdvyalvllnnvlggsmssrlfqdirekrglcysvfsyhssfrdsgmltiya
gtghdqlddlvysiqettsalaekgltekelengkeqlkgslmlslestnsrmsrngkne
lllkkhrsldemieqinavqkqdvsrlakillsaspsislinangelpkalihlehhhhh
h

    Sequence, based on observed residues (ATOM records):
    >3hdiA (A:)
intmtldngvriitekmstvrsvsigiwvgtgsryesaeengishflehmffkgtntrsa
qeiaeffdsiggqvnaftskeytcyyakvlddhagqaidtlsdmffhstfqkeelekerk
vvfeeikmvddtpddivhdllssatygkhslgypilgtvetlnsfnegmlrhymdrfytg
dyvvisvagnvhdelidkiketfsqvkpttynyqgekpmflpnrivrkketeqahlclgy
pglpigdkdvyalvllnnvlggsmssrlfqdirekrglcysvfsyhssfrdsgmltiyag
tghdqlddlvysiqettsalaekgltekelengkeqlkgslmlslestnsrmsrngknel
llkkhrsldemieqinavqkqdvsrlakillsaspsislinangelpkalihle

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3hdiB (B:)
mintmtldngvriitekmstvrsvsigiwvgtgsryesaeengishflehmffkgtntrs
aqeiaeffdsiggqvnaftskeytcyyakvlddhagqaidtlsdmffhstfqkeeleker
kvvfeeikmvddtpddivhdllssatygkhslgypilgtvetlnsfnegmlrhymdrfyt
gdyvvisvagnvhdelidkiketfsqvkpttynyqgekpmflpnrivrkketeqahlclg
ypglpigdkdvyalvllnnvlggsmssrlfqdirekrglcysvfsyhssfrdsgmltiya
gtghdqlddlvysiqettsalaekgltekelengkeqlkgslmlslestnsrmsrngkne
lllkkhrsldemieqinavqkqdvsrlakillsaspsislinangelpkalihlehhhhh
h

    Sequence, based on observed residues (ATOM records):
    >3hdiB (B:)
intmtldngvriitekmstvrsvsigiwvgtgsryesaeengishflehmffkgtntrsa
qeiaeffdsiggqvnaftskeytcyyakvlddhagqaidtlsdmffhstfqkeelekerk
vvfeeikmvddtpddivhdllssatygkhslgypilgtvetlnsfnegmlrhymdrfytg
dyvvisvagnvhdelidkiketfsqvkpttynyqgekpmflpnrivrkketeqahlclgy
pglpigdkdvyalvllnnvlggsmssrlfqdirekrglcysvfsyhssfrdsgmltiyag
tghdqlddlvysiqettsalaekgltekelengkeqlkgslmlslestnsrmsrngknel
llkkhrsldemieqinavqkqdvsrlakillsaspsislinangelpkalihle

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3hdiC (C:)
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    Sequence, based on observed residues (ATOM records):
    >3hdiC (C:)
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  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >3hdiD (D:)
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