PDB entry 3hd7

View 3hd7 on RCSB PDB site
Description: helical extension of the neuronal snare complex into the membrane, spacegroup c 1 2 1
Deposited on 2009-05-07, released 2009-07-14
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.241
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vesicle-associated membrane protein 2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Vamp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63045 (4-90)
      • expression tag (0-3)
  • Chain 'B':
    Compound: syntaxin-1a
    Species: Rattus norvegicus [TaxId:10116]
    Gene: STX1A
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: synaptosomal-associated protein 25
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Snap25
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: synaptosomal-associated protein 25
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Snap25
    Database cross-references and differences (RAF-indexed):
    • Uniprot P60881 (4-End)
      • expression tag (1-3)
  • Chain 'E':
    Compound: vesicle-associated membrane protein 2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Vamp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63045 (4-End)
      • expression tag (0-3)
  • Chain 'F':
    Compound: syntaxin-1a
    Species: Rattus norvegicus [TaxId:10116]
    Gene: STX1A
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: synaptosomal-associated protein 25
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Snap25
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: synaptosomal-associated protein 25
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Snap25
    Database cross-references and differences (RAF-indexed):
    • Uniprot P60881 (4-End)
      • expression tag (2-3)
  • Heterogens: GGG, SO4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >3hd7A (A:)
gshmrrlqqtqaqvdevvdimrvnvdkvlerdqklselddradalqagasqfetsaaklk
rkywwknlkmmiilgvicaiiliiiivyfst

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3hd7B (B:)
gshmdssiskqalseietrhseiiklensirelhdmfmdmamlvesqgemidrieynveh
avdyveravsdtkkavkyqskarrkkimiiiccvilgiiiastiggifg

    Sequence, based on observed residues (ATOM records):
    >3hd7B (B:)
kqalseietrhseiiklensirelhdmfmdmamlvesqgemidrieynvehavdyverav
sdtkkavkyqskarrkkimiiiccvilgiiiastiggi

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3hd7C (C:)
gshmrneleemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqldrveeg
mnhinqdmkeaeknlkdlgk

    Sequence, based on observed residues (ATOM records):
    >3hd7C (C:)
rneleemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqldrveegmnhi
nqdmkeaeknlkdlg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3hd7D (D:)
gshmarenemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktridean
qratkmlg

    Sequence, based on observed residues (ATOM records):
    >3hd7D (D:)
shmarenemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktrideanq
rat

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3hd7E (E:)
gshmrrlqqtqaqvdevvdimrvnvdkvlerdqklselddradalqagasqfetsaaklk
rkywwknlkmmiilgvicaiiliiiivyfst

    Sequence, based on observed residues (ATOM records):
    >3hd7E (E:)
gshmrrlqqtqaqvdevvdimrvnvdkvlerdqklselddradalqagasqfetsaaklk
rkywwknlkmmiilgvicaiiliiiivyfs

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3hd7F (F:)
gshmdssiskqalseietrhseiiklensirelhdmfmdmamlvesqgemidrieynveh
avdyveravsdtkkavkyqskarrkkimiiiccvilgiiiastiggifg

    Sequence, based on observed residues (ATOM records):
    >3hd7F (F:)
skqalseietrhseiiklensirelhdmfmdmamlvesqgemidrieynvehavdyvera
vsdtkkavkyqskarrkkimiiiccvilgiiiastiggi

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3hd7G (G:)
gshmrneleemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqldrveeg
mnhinqdmkeaeknlkdlgk

    Sequence, based on observed residues (ATOM records):
    >3hd7G (G:)
mrneleemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqldrveegmnh
inqdmkeaeknlkdlg

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3hd7H (H:)
gshmarenemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktridean
qratkmlg

    Sequence, based on observed residues (ATOM records):
    >3hd7H (H:)
hmarenemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktrideanqr
at