PDB entry 3hd0

View 3hd0 on RCSB PDB site
Description: crystal structure of tm1865, an endonuclease v from thermotoga maritima
Deposited on 2009-05-06, released 2009-07-14
The last revision was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: endonuclease v
    Species: Thermotoga maritima [TaxId:2336]
    Gene: nfi, TM_1865
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: endonuclease v
    Species: Thermotoga maritima [TaxId:2336]
    Gene: nfi, TM_1865
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: endonuclease v
    Species: Thermotoga maritima [TaxId:2336]
    Gene: nfi, TM_1865
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X2H9 (12-End)
      • expression tag (10-11)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3hd0A (A:)
mgsdkihhhhhhmdyrqlhrwdlppeeaikvqnelrkkikltpyegepeyvagvdlsfpg
keeglavivvleypsfkilevvsergeitfpyipgllafregplflkaweklrtkpdvvv
fdgqglahprklgiashmglfieiptigvaksrlygtfkmpedkrcswsylydgeeiigc
virtkegsapifvspghlmdvesskrlikaftlpgrripeptrlahiytqrlkkglf

    Sequence, based on observed residues (ATOM records):
    >3hd0A (A:)
mdyrqlhrwdlppeeaikvqnelrkkikltpyegepeyvagvdlsfpgkeeglavivvle
ypsfkilevvsergeitfpyipgllafregplflkaweklrtkpdvvvfdgqglahprkl
giashmglfieiptigvaksrlygtfkmpedkrcswsylydgeeiigcvirtkegsapif
vspghlmdvesskrlikaftlpgrripeptrlahiytqrl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3hd0B (B:)
mgsdkihhhhhhmdyrqlhrwdlppeeaikvqnelrkkikltpyegepeyvagvdlsfpg
keeglavivvleypsfkilevvsergeitfpyipgllafregplflkaweklrtkpdvvv
fdgqglahprklgiashmglfieiptigvaksrlygtfkmpedkrcswsylydgeeiigc
virtkegsapifvspghlmdvesskrlikaftlpgrripeptrlahiytqrlkkglf

    Sequence, based on observed residues (ATOM records):
    >3hd0B (B:)
lhrwdlppeeaikvqnelrkkikltpyegepeyvagvdlsfpgkeeglavivvleypsfk
ilevvsergeitfpyipgllafregplflkaweklrtkpdvvvfdgqglahprklgiash
mglfieiptigvaksrlygtfkmpedkrcswsylydgeeiigcvirtkegsapifvspgh
lmdvesskrlikaftlpgrripeptrlahiytqrlk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3hd0D (D:)
mgsdkihhhhhhmdyrqlhrwdlppeeaikvqnelrkkikltpyegepeyvagvdlsfpg
keeglavivvleypsfkilevvsergeitfpyipgllafregplflkaweklrtkpdvvv
fdgqglahprklgiashmglfieiptigvaksrlygtfkmpedkrcswsylydgeeiigc
virtkegsapifvspghlmdvesskrlikaftlpgrripeptrlahiytqrlkkglf

    Sequence, based on observed residues (ATOM records):
    >3hd0D (D:)
hhmdyrqlhrwdlppeeaikvqnelrkkikltpyegepeyvagvdlsfpgkeeglavivv
leypsfkilevvsergeitfpyipgllafregplflkaweklrtkpdvvvfdgqglahpr
klgiashmglfieiptigvaksrlygtfkmpedkrcswsylydgeeiigcvirtkegsap
ifvspghlmdvesskrlikaftlpgrripeptrlahiytqrlk