PDB entry 3hb3

View 3hb3 on RCSB PDB site
Description: High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase
Class: oxidoreductase
Keywords: Electron transfer, Proton transfer, Proton pumping, Membrane protein, Cell inner membrane, Cell membrane, Copper, Disulfide bond, Electron transport, Heme, Hydrogen ion transport, Ion transport, Iron, Membrane, Metal-binding, Oxidoreductase, Respiratory chain, Transmembrane, Transport, Pyrrolidone carboxylic acid
Deposited on 2009-05-04, released 2009-06-23
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-06-23, with a file datestamp of 2009-06-19.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.22
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytochrome c oxidase subunit 1-beta
    Species: Paracoccus denitrificans [TaxId:266]
    Gene: ctaDII
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3hb3a_
  • Chain 'B':
    Compound: Cytochrome c oxidase subunit 2
    Species: Paracoccus denitrificans [TaxId:266]
    Gene: ctaC, coiI, ctaB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3hb3b1, d3hb3b2
  • Chain 'C':
    Compound: antibody fv fragment
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3HB3 (0-End)
    Domains in SCOPe 2.05: d3hb3c_
  • Chain 'D':
    Compound: antibody fv fragment
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3HB3 (0-End)
    Domains in SCOPe 2.05: d3hb3d_
  • Heterogens: HEA, CU1, MN, CA, LDA, LMT, PEO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3hb3A (A:)
    madaavhghgdhhdtrgfftrwfmstnhkdigilylftagivglisvcftvymrmelqhp
    gvqymclegarliadasaectpnghlwnvmityhgvlmmffvvipalfggfgnyfmplhi
    gapdmafprlnnlsywmyvcgvalgvasllapggndqmgsgvgwvlypplstteagysmd
    laifavhvsgassilgainiittflnmrapgmtlfkvplfawsvfitawlillslpvlag
    aitmllmdrnfgtqffdpagggdpvlyqhilwffghpevyiiilpgfgiishvistfakk
    pifgylpmvlamaaigilgfvvwahhmytagmsltqqayfmlatmtiavptgikvfswia
    tmwggsiefktpmlwafgflflftvggvtgvvlsqapldrvyhdtyyvvahfhyvmslga
    vfgifagvyywigkmsgrqypewagqlhfwmmfigsnliffpqhflgrqgmprryidypv
    efaywnnissigayisfasflffigivfytlfagkrvnvpnywnehadtlewtlpspppe
    htfetlpkredwdrahah
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hb3A (A:)
    gfftrwfmstnhkdigilylftagivglisvcftvymrmelqhpgvqymclegarliada
    saectpnghlwnvmityhgvlmmffvvipalfggfgnyfmplhigapdmafprlnnlsyw
    myvcgvalgvasllapggndqmgsgvgwvlypplstteagysmdlaifavhvsgassilg
    ainiittflnmrapgmtlfkvplfawsvfitawlillslpvlagaitmllmdrnfgtqff
    dpagggdpvlyqhilwffghpevyiiilpgfgiishvistfakkpifgylpmvlamaaig
    ilgfvvwahhmytagmsltqqayfmlatmtiavptgikvfswiatmwggsiefktpmlwa
    fgflflftvggvtgvvlsqapldrvyhdtyyvvahfhyvmslgavfgifagvyywigkms
    grqypewagqlhfwmmfigsnliffpqhflgrqgmprryidypvefaywnnissigayis
    fasflffigivfytlfagkrvnvpnywnehadtlewtlpspppehtfet
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3hb3B (B:)
    mmaiatkrrgvaavmslgvatmtavpalaqdvlgdlpvigkpvnggmnfqpassplahdq
    qwldhfvlyiitavtifvcllllicivrfnrranpvparfthntpieviwtlvpvlilva
    igafslpilfrsqempndpdlvikaighqwywsyeypndgvafdalmlekealadagyse
    deyllatdnpvvvpvgkkvlvqvtatdvihawtipafavkqdavpgriaqlwfsvdqegv
    yfgqcselcginhaympivvkavsqekyeawlagakeefaadasdylpaspvklasae
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hb3B (B:)
    qdvlgdlpvigkpvnggmnfqpassplahdqqwldhfvlyiitavtifvcllllicivrf
    nrranpvparfthntpieviwtlvpvlilvaigafslpilfrsqempndpdlvikaighq
    wywsyeypndgvafdalmlekealadagysedeyllatdnpvvvpvgkkvlvqvtatdvi
    hawtipafavkqdavpgriaqlwfsvdqegvyfgqcselcginhaympivvkavsqekye
    awlagakeefaa
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3hb3C (C:)
    evklqesggdlvqpggslklscaasgftfssytmswvrqtpekrlewvasinngggrtyy
    pdtvkgrftisrdnakntlylqmsslksedtamyycvrheyyyamdywgqgttvtvssaw
    rhpqfgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hb3C (C:)
    evklqesggdlvqpggslklscaasgftfssytmswvrqtpekrlewvasinngggrtyy
    pdtvkgrftisrdnakntlylqmsslksedtamyycvrheyyyamdywgqgttvtvss
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3hb3D (D:)
    dieltqtpvslsasvgetvtitcraseniysylawyqqkqgkspqflvynaktlgegvps
    rfsgsgsgtqfslkinsllpedfgsyycqhhygtppltfgggtkleikreqkliseedlm
    

    Sequence, based on observed residues (ATOM records): (download)
    >3hb3D (D:)
    dieltqtpvslsasvgetvtitcraseniysylawyqqkqgkspqflvynaktlgegvps
    rfsgsgsgtqfslkinsllpedfgsyycqhhygtppltfgggtkleik