PDB entry 3gzu

View 3gzu on RCSB PDB site
Description: vp7 recoated rotavirus dlp
Deposited on 2009-04-07, released 2009-07-14
The last revision was dated 2019-11-13, with a file datestamp of 2019-11-08.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Inner capsid protein VP2
    Species: Rotavirus A [TaxId:28875]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Inner capsid protein VP2
    Species: Rotavirus A [TaxId:28875]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Intermediate capsid protein VP6
    Species: Rhesus rotavirus [TaxId:10969]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gzuA (A:)
    ehqkeiqyeilqktiptfepkesilkkledikpeqakkqtklfrifeprqlpiyrangek
    elrnrwywklkkdtlpdgdydvreyflnlydqvltempdylllkdmavenknsrdagkvv
    dsetasicdaifqdeetegavrrfiaemrqrvqadrnvvnypsilhpidyafneyflqhq
    lveplnndiifnyiperirndvnyilnmdrnlpstaryirpnllqdrlnlhdnfeslwdt
    ittsnyilarsvvpdlkelvsteaqiqkmsqdlqlealtiqsetqfltginsqaandcfk
    tliaamlsqrtmsldfvttnymslisgmwlltvvpndmfireslvacqlaivntiiypaf
    gmqrmhyrngdpqtpfqiaeqqiqnfqvanwlhfvnnnqfrqvvidgvlnqvlndnirdg
    hvinqlmealmqlsrqqfptmpvdykrsiqrgilllsnrlgqlvdltrllaynyetlmac
    vtmnmqhvqtltteklqltsvtslcmlignatvipspqtlfhyynvnvnfhsnynerind
    avaiitaanrlnlyqkkmkaivedflkrlhifdvarvpddqmyrlrdrlrllpvevrrld
    ifnlilmnmdqierasdkiaqgviiayrdmqlerdemygyvniarnldgfqqinleelmr
    tgdyaqitnmllnnqpvalvgalpfvtdssvisliakldatvfaqivklrkvdtlkpily
    kinsdsndfylvanydwvptsttkvykqvpqqfdfrnsmhmltsnltftvysdllafvsa
    dtvepinavafdnmrimnel
    

    Sequence, based on observed residues (ATOM records):
    >3gzuA (A:)
    pkesilkkledikpeqakkqtklfrifeprqlpiyrangekelrnrwywklkkdtlpdgd
    ydvreyflnlydqvltempdylllkdmavenknsrdagkvvdsetasicdaifqdeeteg
    avrrfiaemrqrvqadrnvvnypsilhpidyafneyflqhqlveplnndiifnyiperir
    ndvnyilnmdrnlpstaryirpnllqdrlnlhdnfeslwdtittsnyilarsvvpdlkel
    vsteaqiqkmsqdlqlealtiqsetqfltginsqaandcfktliaamlsqrtmsldfvtt
    nymslisgmwlltvvpndmfireslvacqlaivntiiypafgmqrmhyrngdpqtpfqia
    eqqiqnfqvanwlhfvnnnqfrqvvidgvlnqvlndnirdghvinqlmealmqlsrqqfp
    tmpvdykrsiqrgilllsnrlgqlvdltrllaynyetlmacvtmnmqhvqtltteklqlt
    svtslcmlignatvipspqtlfhyynvnvnfhsnynerindavaiitaanrlnlyqkkmk
    aivedflkrlhifdvarvpddqmyrlrdrlrllpvevrrldifnlilmnmdqierasdki
    aqgviiayrdmqlerdemygyvniarnldgfqqinleelmrtgdyaqitnmllnnqpval
    vgalpfvtdssvisliakldatvfaqivklrkvdtlkpilykinsdsndfylvanydwvp
    tsttkvykqvpqqfdfrnsmhmltsnltftvysdllafvsadtvepinavafdnmrimne
    l
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuB (B:)
    ehqkeiqyeilqktiptfepkesilkkledikpeqakkqtklfrifeprqlpiyrangek
    elrnrwywklkkdtlpdgdydvreyflnlydqvltempdylllkdmavenknsrdagkvv
    dsetasicdaifqdeetegavrrfiaemrqrvqadrnvvnypsilhpidyafneyflqhq
    lveplnndiifnyiperirndvnyilnmdrnlpstaryirpnllqdrlnlhdnfeslwdt
    ittsnyilarsvvpdlkelvsteaqiqkmsqdlqlealtiqsetqfltginsqaandcfk
    tliaamlsqrtmsldfvttnymslisgmwlltvvpndmfireslvacqlaivntiiypaf
    gmqrmhyrngdpqtpfqiaeqqiqnfqvanwlhfvnnnqfrqvvidgvlnqvlndnirdg
    hvinqlmealmqlsrqqfptmpvdykrsiqrgilllsnrlgqlvdltrllaynyetlmac
    vtmnmqhvqtltteklqltsvtslcmlignatvipspqtlfhyynvnvnfhsnynerind
    avaiitaanrlnlyqkkmkaivedflkrlhifdvarvpddqmyrlrdrlrllpvevrrld
    ifnlilmnmdqierasdkiaqgviiayrdmqlerdemygyvniarnldgfqqinleelmr
    tgdyaqitnmllnnqpvalvgalpfvtdssvisliakldatvfaqivklrkvdtlkpily
    kinsdsndfylvanydwvptsttkvykqvpqqfdfrnsmhmltsnltftvysdllafvsa
    dtvepinavafdnmrimnel
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuC (C:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuD (D:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuE (E:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuF (F:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuG (G:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuH (H:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuI (I:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuJ (J:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuK (K:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuL (L:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuM (M:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuN (N:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >3gzuO (O:)
    mdvlyslsktlkdardkivegtlysnvsdliqqfnqmiitmngnefqtggignlpirnwn
    fdfgllgttllnldanyvetarntidyfvdfvdnvcmdemvresqrngiapqsdslikls
    gikfkrinfdnsseyienwnlqnrrqrtgftfhkpnifpysasftlnrsqpahdnlmgtm
    wlnagseiqvagfdyscainapantqqfehivqlrrvlttatitllpdaerfsfprvits
    adgattwyfnpvilrpnnveiefllngqiintyqarfgtiiarnfdtirlsfqlmrppnm
    tpavaalfpnaqpfehhatvgltlriesavcesvladasetmlanvtsvrqeyaipvgpv
    fppgmnwtdlitnyspsrednlqrvftvasirsmlvk