PDB entry 3gyk

View 3gyk on RCSB PDB site
Description: The crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS-3
Deposited on 2009-04-03, released 2009-06-09
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.76 Å
R-factor: 0.162
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 27kDa outer membrane protein
    Species: Silicibacter pomeroyi [TaxId:246200]
    Gene: SPOA0362
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LKL9 (3-174)
      • expression tag (1-2)
  • Chain 'B':
    Compound: 27kDa outer membrane protein
    Species: Silicibacter pomeroyi [TaxId:246200]
    Gene: SPOA0362
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LKL9 (3-174)
      • expression tag (2)
  • Chain 'C':
    Compound: 27kDa outer membrane protein
    Species: Silicibacter pomeroyi [TaxId:246200]
    Gene: SPOA0362
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LKL9 (3-174)
      • expression tag (2)
  • Chain 'D':
    Compound: 27kDa outer membrane protein
    Species: Silicibacter pomeroyi [TaxId:246200]
    Gene: SPOA0362
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LKL9 (3-174)
      • expression tag (2)
  • Heterogens: SO4, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gykA (A:)
snanrdslfndpnapvlgnpegdvtvveffdyncpycrramaevqglvdadpnvrlvyre
wpilgegsdfaaraalaarqqgkyeafhwalmgmsgkanetgvlriarevgldteqlqrd
meapevtahiaqsmalaqklgfngtpsfvvedalvpgfveqsqlqdavdrarkaa

    Sequence, based on observed residues (ATOM records):
    >3gykA (A:)
nanrdslfndpnapvlgnpegdvtvveffdyncpycrramaevqglvdadpnvrlvyrew
pilgegsdfaaraalaarqqgkyeafhwalmgmsgkanetgvlriarevgldteqlqrdm
eapevtahiaqsmalaqklgfngtpsfvvedalvpgfveqsqlqdavdrarkaa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3gykB (B:)
snanrdslfndpnapvlgnpegdvtvveffdyncpycrramaevqglvdadpnvrlvyre
wpilgegsdfaaraalaarqqgkyeafhwalmgmsgkanetgvlriarevgldteqlqrd
meapevtahiaqsmalaqklgfngtpsfvvedalvpgfveqsqlqdavdrarkaa

    Sequence, based on observed residues (ATOM records):
    >3gykB (B:)
anrdslfndpnapvlgnpegdvtvveffdyncpycrramaevqglvdadpnvrlvyrewp
ilgegsdfaaraalaarqqgkyeafhwalmgmsgkanetgvlriarevgldteqlqrdme
apevtahiaqsmalaqklgfngtpsfvvedalvpgfveqsqlqdavdrarkaa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3gykC (C:)
snanrdslfndpnapvlgnpegdvtvveffdyncpycrramaevqglvdadpnvrlvyre
wpilgegsdfaaraalaarqqgkyeafhwalmgmsgkanetgvlriarevgldteqlqrd
meapevtahiaqsmalaqklgfngtpsfvvedalvpgfveqsqlqdavdrarkaa

    Sequence, based on observed residues (ATOM records):
    >3gykC (C:)
anrdslfndpnapvlgnpegdvtvveffdyncpycrramaevqglvdadpnvrlvyrewp
ilgegsdfaaraalaarqqgkyeafhwalmgmsgkanetgvlriarevgldteqlqrdme
apevtahiaqsmalaqklgfngtpsfvvedalvpgfveqsqlqdavdrarkaa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3gykD (D:)
snanrdslfndpnapvlgnpegdvtvveffdyncpycrramaevqglvdadpnvrlvyre
wpilgegsdfaaraalaarqqgkyeafhwalmgmsgkanetgvlriarevgldteqlqrd
meapevtahiaqsmalaqklgfngtpsfvvedalvpgfveqsqlqdavdrarkaa

    Sequence, based on observed residues (ATOM records):
    >3gykD (D:)
anrdslfndpnapvlgnpegdvtvveffdyncpycrramaevqglvdadpnvrlvyrewp
ilgegsdfaaraalaarqqgkyeafhwalmgmsgkanetgvlriarevgldteqlqrdme
apevtahiaqsmalaqklgfngtpsfvvedalvpgfveqsqlqdavdrarkaa