PDB entry 3gyg

View 3gyg on RCSB PDB site
Description: Crystal structure of yhjK (haloacid dehalogenase-like hydrolase protein) from Bacillus subtilis
Deposited on 2009-04-03, released 2009-05-12
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.214
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NTD biosynthesis operon putative hydrolase ntdB
    Species: Bacillus subtilis subsp. subtilis [TaxId:224308]
    Gene: ntdB, yhjK, BSU10540
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07565 (3-End)
      • expression tag (1-2)
  • Chain 'B':
    Compound: NTD biosynthesis operon putative hydrolase ntdB
    Species: Bacillus subtilis subsp. subtilis [TaxId:224308]
    Gene: ntdB, yhjK, BSU10540
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07565 (3-End)
      • expression tag (0-2)
  • Chain 'C':
    Compound: NTD biosynthesis operon putative hydrolase ntdB
    Species: Bacillus subtilis subsp. subtilis [TaxId:224308]
    Gene: ntdB, yhjK, BSU10540
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07565 (3-End)
      • expression tag (0-2)
  • Chain 'D':
    Compound: NTD biosynthesis operon putative hydrolase ntdB
    Species: Bacillus subtilis subsp. subtilis [TaxId:224308]
    Gene: ntdB, yhjK, BSU10540
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07565 (3-End)
      • expression tag (0-2)
  • Heterogens: MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gygA (A:)
snamllskkseyktlstvehpqyivfcdfdetyfphtideqkqqdiyeledyleqkskdg
eliigwvtgssiesildkmgrgkfryfphfiasdlgteityfsehnfgqqdnkwnsrine
gfskekveklvkqlhenhnillnpqtqlgksrykhnfyyqeqdeindkknllaiekicee
ygvsvninrcnplagdpedsydvdfipigtgkneivtfmlekynlnteraiafgdsgndv
rmlqtvgngyllknatqeaknlhnlitdseyskgitntlkkligfmrrk

    Sequence, based on observed residues (ATOM records):
    >3gygA (A:)
namllskkseyktlstvehpqyivfcdfdetyfphtideqkqqdiyeledyleqkskdge
liigwvtgssiesildkmgrgkfryfphfiasdlgteityfsehnfgqqdnkwnsrineg
fskekveklvkqlhenhnillnpqtqlgksrykhnfyyqeqdeindkknllaiekiceey
gvsvninrcnplagdpedsydvdfipigtgkneivtfmlekynlnteraiafgdsgndvr
mlqtvgngyllknatqeaknlhnlitdseyskgitntlkkligfm

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3gygB (B:)
snamllskkseyktlstvehpqyivfcdfdetyfphtideqkqqdiyeledyleqkskdg
eliigwvtgssiesildkmgrgkfryfphfiasdlgteityfsehnfgqqdnkwnsrine
gfskekveklvkqlhenhnillnpqtqlgksrykhnfyyqeqdeindkknllaiekicee
ygvsvninrcnplagdpedsydvdfipigtgkneivtfmlekynlnteraiafgdsgndv
rmlqtvgngyllknatqeaknlhnlitdseyskgitntlkkligfmrrk

    Sequence, based on observed residues (ATOM records):
    >3gygB (B:)
snamllskkseyktlstvehpqyivfcdfdetyfphtideqkqqdiyeledyleqkskdg
eliigwvtgssiesildkmgrgkfryfphfiasdlgteityfsehnfgqqdnkwnsrine
gfskekveklvkqlhekiceeygvsdfipigtgkneivtfmlekynlnteraiafgdsgn
dvrmlqtvgngyllknatqeaknlhnlitdseyskgitntlkkligfmrr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3gygC (C:)
snamllskkseyktlstvehpqyivfcdfdetyfphtideqkqqdiyeledyleqkskdg
eliigwvtgssiesildkmgrgkfryfphfiasdlgteityfsehnfgqqdnkwnsrine
gfskekveklvkqlhenhnillnpqtqlgksrykhnfyyqeqdeindkknllaiekicee
ygvsvninrcnplagdpedsydvdfipigtgkneivtfmlekynlnteraiafgdsgndv
rmlqtvgngyllknatqeaknlhnlitdseyskgitntlkkligfmrrk

    Sequence, based on observed residues (ATOM records):
    >3gygC (C:)
snamllskkseyktlstvehpqyivfcdfdetyfphtideqkqqdiyeledyleqkskdg
eliigwvtgssiesildkmgrgkfryfphfiasdlgteityfsehnfgqqdnkwnsrine
gfskekveklvkqlhenhnillnpqtqlgksrykhnfyyqekknllaiekiceeygvsvn
inrcnplagdpedsydvdfipigtgkneivtfmlekynlnteraiafgdsgndvrmlqtv
gngyllknatqeaknlhnlitdseyskgitntlkkli

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3gygD (D:)
snamllskkseyktlstvehpqyivfcdfdetyfphtideqkqqdiyeledyleqkskdg
eliigwvtgssiesildkmgrgkfryfphfiasdlgteityfsehnfgqqdnkwnsrine
gfskekveklvkqlhenhnillnpqtqlgksrykhnfyyqeqdeindkknllaiekicee
ygvsvninrcnplagdpedsydvdfipigtgkneivtfmlekynlnteraiafgdsgndv
rmlqtvgngyllknatqeaknlhnlitdseyskgitntlkkligfmrrk

    Sequence, based on observed residues (ATOM records):
    >3gygD (D:)
snamllskkseyktlstvehpqyivfcdfdetyfphtideqkqqdiyeledyleqkskdg
eliigwvtgssiesildkmgrgkfryfphfiasdlgteityfsehnfgqqdnkwnsrine
gfskekveklvkqlhnillnnfyynllaiekiceeygvsvninrcdvdfipigtgkneiv
tfmlekynlnteraiafgdsgndvrmlqtvgngyllknatqeaknlhnlitdseyskgit
ntlkkligfm