PDB entry 3gvk

View 3gvk on RCSB PDB site
Description: Crystal structure of endo-neuraminidase NF mutant
Class: hydrolase
Keywords: endo neuraminidase, polysialic acid, triple-beta helix, Glycosidase, Hydrolase
Deposited on 2009-03-31, released 2010-03-02
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-04-28, with a file datestamp of 2010-04-23.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: 0.266
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Endo-N-acetylneuraminidase
    Species: Enterobacteria phage K1F [TaxId:344021]
    Gene: sia, 17, 17.0
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q858B1 (Start-669)
      • engineered (109)
    Domains in SCOPe 2.06: d3gvka1, d3gvka2
  • Chain 'B':
    Compound: Endo-N-acetylneuraminidase
    Species: Enterobacteria phage K1F [TaxId:344021]
    Gene: sia, 17, 17.0
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q858B1 (5-669)
      • expression tag (4)
      • engineered (109)
    Domains in SCOPe 2.06: d3gvkb1, d3gvkb2, d3gvkb3
  • Chain 'C':
    Compound: Endo-N-acetylneuraminidase
    Species: Enterobacteria phage K1F [TaxId:344021]
    Gene: sia, 17, 17.0
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q858B1 (5-669)
      • expression tag (4)
      • engineered (109)
    Domains in SCOPe 2.06: d3gvkc1, d3gvkc2, d3gvkc3
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gvkA (A:)
vprgsakgdgvtddtaaltsalndtpvgqkingngktykvtslpdisrfintrfvyerip
gqplyyaseefvqgelfkitdtpyynawpqdkafvyenviyapymgsdragvsrlhvswv
ksgddgqtwstpewltdlhpdyptvnyhcmsmgvcrnrlfamietrtlaknaltncalwd
rpmsrslhltggitkaanqryatihvpdhglfvgdfvnfsnsavtgvsgdmtvatvidkd
nftvltpnqqtsdlnnagknwhmgtsfhkspwrktdlglipsvtevhsfatidnngfamg
yhqgdvaprevglfyfpdafnspsnyvrrqipseyepdasepcikyydgvlylitrgtrg
drlgsslhrsrdigqtweslrfphnvhhttlpfakvgddlimfgseraeneweagapddr
ykasyprtfyarlnvnnwnaddiewvnitdqiyqggivnsgvgvgsvvvkdnyiyymfgg
edhfnpwtygdnsakdpfksdghpsdlycykmkigpdnrvsrdfrygavpnravpvffdt
ngvrtvpapmeftgdlglghvtirastssnirsevlmegeygfigksiptdnpagqriif
cggegtssttgaqitlyganntdsrrivyngdehlfqsadvkpyndnvtalggpsnrftt
aylgsnpivt

    Sequence, based on observed residues (ATOM records): (download) 
    >3gvkA (A:)
vgqkingngktykvtslpdisrfintrfvyeripgqplyyaseefvqgelfkitdtpyyn
awpqdkafvyenviyapymgsdragvsrlhvswvksgddgqtwstpewltdlhpdyptvn
yhcmsmgvcrnrlfamietrtlaknaltncalwdrpmsrslhltggitkaanqryatihv
pdhglfvgdfvnfsnsavtgvsgdmtvatvidkdnftvltpnqqtsdlnnagknwhmgts
fhkspwrktdlglipsvtevhsfatidnngfamgyhqgdvaprevglfyfpdafnspsny
vrrqipseyepdasepcikyydgvlylitrgtrgdrlgsslhrsrdigqtweslrfphnv
hhttlpfakvgddlimfgseraeneweagapddrykasyprtfyarlnvnnwnaddiewv
nitdqiyqggivnsgvgvgsvvvkdnyiyymfggedhfnpwtygdnsakdpfksdghpsd
lycykmkigpdnrvsrdfrygavpnravpvffdtngvrtvpapmeftgdlglghvtiras
tssnirsevlmegeygfigksiptdnpagqriifcggegtssttgaqitlyganntdsrr
ivyngdehlfqsadvkpyndnvtalggpsnrfttaylgsnpivt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3gvkB (B:)
vprgsakgdgvtddtaaltsalndtpvgqkingngktykvtslpdisrfintrfvyerip
gqplyyaseefvqgelfkitdtpyynawpqdkafvyenviyapymgsdragvsrlhvswv
ksgddgqtwstpewltdlhpdyptvnyhcmsmgvcrnrlfamietrtlaknaltncalwd
rpmsrslhltggitkaanqryatihvpdhglfvgdfvnfsnsavtgvsgdmtvatvidkd
nftvltpnqqtsdlnnagknwhmgtsfhkspwrktdlglipsvtevhsfatidnngfamg
yhqgdvaprevglfyfpdafnspsnyvrrqipseyepdasepcikyydgvlylitrgtrg
drlgsslhrsrdigqtweslrfphnvhhttlpfakvgddlimfgseraeneweagapddr
ykasyprtfyarlnvnnwnaddiewvnitdqiyqggivnsgvgvgsvvvkdnyiyymfgg
edhfnpwtygdnsakdpfksdghpsdlycykmkigpdnrvsrdfrygavpnravpvffdt
ngvrtvpapmeftgdlglghvtirastssnirsevlmegeygfigksiptdnpagqriif
cggegtssttgaqitlyganntdsrrivyngdehlfqsadvkpyndnvtalggpsnrftt
aylgsnpivt

    Sequence, based on observed residues (ATOM records): (download) 
    >3gvkB (B:)
sakgdgvtddtaaltsalndtpvgqkingngktykvtslpdisrfintrfvyeripgqpl
yyaseefvqgelfkitdtpyynawpqdkafvyenviyapymgsdragvsrlhvswvksgd
dgqtwstpewltdlhpdyptvnyhcmsmgvcrnrlfamietrtlaknaltncalwdrpms
rslhltggitkaanqryatihvpdhglfvgdfvnfsnsavtgvsgdmtvatvidkdnftv
ltpnqqtsdlnnagknwhmgtsfhkspwrktdlglipsvtevhsfatidnngfamgyhqg
dvaprevglfyfpdafnspsnyvrrqipseyepdasepcikyydgvlylitrgtrgdrlg
sslhrsrdigqtweslrfphnvhhttlpfakvgddlimfgseraeneweagapddrykas
yprtfyarlnvnnwnaddiewvnitdqiyqggivnsgvgvgsvvvkdnyiyymfggedhf
npwtygdnsakdpfksdghpsdlycykmkigpdnrvsrdfrygavpnravpvffdtngvr
tvpapmeftgdlglghvtirastssnirsevlmegeygfigksiptdnpagqriifcgge
gtssttgaqitlyganntdsrrivyngdehlfqsadvkpyndnvtalggpsnrfttaylg
snpivt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3gvkC (C:)
vprgsakgdgvtddtaaltsalndtpvgqkingngktykvtslpdisrfintrfvyerip
gqplyyaseefvqgelfkitdtpyynawpqdkafvyenviyapymgsdragvsrlhvswv
ksgddgqtwstpewltdlhpdyptvnyhcmsmgvcrnrlfamietrtlaknaltncalwd
rpmsrslhltggitkaanqryatihvpdhglfvgdfvnfsnsavtgvsgdmtvatvidkd
nftvltpnqqtsdlnnagknwhmgtsfhkspwrktdlglipsvtevhsfatidnngfamg
yhqgdvaprevglfyfpdafnspsnyvrrqipseyepdasepcikyydgvlylitrgtrg
drlgsslhrsrdigqtweslrfphnvhhttlpfakvgddlimfgseraeneweagapddr
ykasyprtfyarlnvnnwnaddiewvnitdqiyqggivnsgvgvgsvvvkdnyiyymfgg
edhfnpwtygdnsakdpfksdghpsdlycykmkigpdnrvsrdfrygavpnravpvffdt
ngvrtvpapmeftgdlglghvtirastssnirsevlmegeygfigksiptdnpagqriif
cggegtssttgaqitlyganntdsrrivyngdehlfqsadvkpyndnvtalggpsnrftt
aylgsnpivt

    Sequence, based on observed residues (ATOM records): (download) 
    >3gvkC (C:)
sakgdgvtddtaaltsalndtpvgqkingngktykvtslpdisrfintrfvyeripgqpl
yyaseefvqgelfkitdtpyynawpqdkafvyenviyapymgsdragvsrlhvswvksgd
dgqtwstpewltdlhpdyptvnyhcmsmgvcrnrlfamietrtlaknaltncalwdrpms
rslhltggitkaanqryatihvpdhglfvgdfvnfsnsavtgvsgdmtvatvidkdnftv
ltpnqqtsdlnnagknwhmgtsfhkspwrktdlglipsvtevhsfatidnngfamgyhqg
dvaprevglfyfpdafnspsnyvrrqipseyepdasepcikyydgvlylitrgtrgdrlg
sslhrsrdigqtweslrfphnvhhttlpfakvgddlimfgseraeneweagapddrykas
yprtfyarlnvnnwnaddiewvnitdqiyqggivnsgvgvgsvvvkdnyiyymfggedhf
npwtygdnsakdpfksdghpsdlycykmkigpdnrvsrdfrygavpnravpvffdtngvr
tvpapmeftgdlglghvtirastssnirsevlmegeygfigksiptdnpagqriifcgge
gtssttgaqitlyganntdsrrivyngdehlfqsadvkpyndnvtalggpsnrfttaylg
snpivt