PDB entry 3gvh

View 3gvh on RCSB PDB site
Description: Crystal structure of Lactate/malate dehydrogenase from Brucella melitensis
Class: oxidoreductase
Keywords: LACTATE/MALATE DEHYDROGENASE, BRUCELLA MELITENSIS, NAD, Oxidoreductase, Tricarboxylic acid cycle, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID
Deposited on 2009-03-31, released 2009-04-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-04-14, with a file datestamp of 2009-04-10.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.176
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: malate dehydrogenase
    Species: Brucella melitensis biovar Abortus 2308 [TaxId:359391]
    Gene: mdh, BAB1_1927
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvha1, d3gvha2
  • Chain 'B':
    Compound: malate dehydrogenase
    Species: Brucella melitensis biovar Abortus 2308 [TaxId:359391]
    Gene: mdh, BAB1_1927
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvhb1, d3gvhb2
  • Chain 'C':
    Compound: malate dehydrogenase
    Species: Brucella melitensis biovar Abortus 2308 [TaxId:359391]
    Gene: mdh, BAB1_1927
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvhc1, d3gvhc2
  • Chain 'D':
    Compound: malate dehydrogenase
    Species: Brucella melitensis biovar Abortus 2308 [TaxId:359391]
    Gene: mdh, BAB1_1927
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvhd1, d3gvhd2
  • Heterogens: NAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gvhA (A:)
gpgsmarnkialigsgmiggtlahlaglkelgdvvlfdiaegtpqgkgldiaesspvdgf
dakftgandyaaiegadvvivtagvprkpgmsrddllginlkvmeqvgagikkyapeafv
icitnpldamvwalqkfsglpahkvvgmagvldsarfryflseefnvsvedvtvfvlggh
gdsmvplarystvagiplpdlvkmgwtsqdkldkiiqrtrdggaeivgllktgsafyapa
asaiqmaesylkdkkrvlpvaaqlsgqygvkdmyvgvptvigangveriieidldkdeka
qfdksvasvaglceacigiapslk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gvhA (A:)
arnkialigsgmiggtlahlaglkelgdvvlfdiaegtpqgkgldiaesspvdgfdakft
gandyaaiegadvvivtagvprkpgmsrddllginlkvmeqvgagikkyapeafvicitn
pldamvwalqkfsglpahkvvgmagvldsarfryflseefnvsvedvtvfvlgghgdsmv
plarystvagiplpdlvkmgwtsqdkldkiiqrtrdggaeivgllktgsafyapaasaiq
maesylkdkkrvlpvaaqlsgqygvkdmyvgvptvigangveriieidldkdekaqfdks
vasvaglceacigiapsl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3gvhB (B:)
gpgsmarnkialigsgmiggtlahlaglkelgdvvlfdiaegtpqgkgldiaesspvdgf
dakftgandyaaiegadvvivtagvprkpgmsrddllginlkvmeqvgagikkyapeafv
icitnpldamvwalqkfsglpahkvvgmagvldsarfryflseefnvsvedvtvfvlggh
gdsmvplarystvagiplpdlvkmgwtsqdkldkiiqrtrdggaeivgllktgsafyapa
asaiqmaesylkdkkrvlpvaaqlsgqygvkdmyvgvptvigangveriieidldkdeka
qfdksvasvaglceacigiapslk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gvhB (B:)
arnkialigsgmiggtlahlaglkelgdvvlfdiaegtpqgkgldiaesspvdgfdakft
gandyaaiegadvvivtagvpsrddllginlkvmeqvgagikkyapeafvicitnpldam
vwalqkfsglpahkvvgmagvldsarfryflseefnvsvedvtvfvlgghgdsmvplary
stvagiplpdlvkmgwtsqdkldkiiqrtrdggaeivgllktgsafyapaasaiqmaesy
lkdkkrvlpvaaqlsgqygvkdmyvgvptvigangveriieidldkdekaqfdksvasva
glceacigiapsl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3gvhC (C:)
gpgsmarnkialigsgmiggtlahlaglkelgdvvlfdiaegtpqgkgldiaesspvdgf
dakftgandyaaiegadvvivtagvprkpgmsrddllginlkvmeqvgagikkyapeafv
icitnpldamvwalqkfsglpahkvvgmagvldsarfryflseefnvsvedvtvfvlggh
gdsmvplarystvagiplpdlvkmgwtsqdkldkiiqrtrdggaeivgllktgsafyapa
asaiqmaesylkdkkrvlpvaaqlsgqygvkdmyvgvptvigangveriieidldkdeka
qfdksvasvaglceacigiapslk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gvhC (C:)
arnkialigsgmiggtlahlaglkelgdvvlfdiaegtpqgkgldiaesspvdgfdakft
gandyaaiegadvvivtagvpsrddllginlkvmeqvgagikkyapeafvicitnpldam
vwalqkfsglpahkvvgmagvldsarfryflseefnvsvedvtvfvlgghgdsmvplary
stvagiplpdlvkmgwtsqdkldkiiqrtrdggaeivgllktgsafyapaasaiqmaesy
lkdkkrvlpvaaqlsgqygvkdmyvgvptvigangveriieidldkdekaqfdksvasva
glceacigiapsl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3gvhD (D:)
gpgsmarnkialigsgmiggtlahlaglkelgdvvlfdiaegtpqgkgldiaesspvdgf
dakftgandyaaiegadvvivtagvprkpgmsrddllginlkvmeqvgagikkyapeafv
icitnpldamvwalqkfsglpahkvvgmagvldsarfryflseefnvsvedvtvfvlggh
gdsmvplarystvagiplpdlvkmgwtsqdkldkiiqrtrdggaeivgllktgsafyapa
asaiqmaesylkdkkrvlpvaaqlsgqygvkdmyvgvptvigangveriieidldkdeka
qfdksvasvaglceacigiapslk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gvhD (D:)
arnkialigsgmiggtlahlaglkelgdvvlfdiaegtpqgkgldiaesspvdgfdakft
gandyaaiegadvvivtagvpsrddllginlkvmeqvgagikkyapeafvicitnpldam
vwalqkfsglpahkvvgmagvldsarfryflseefnvsvedvtvfvlgghgdsmvplary
stvagiplpdlvkmgwtsqdkldkiiqrtrdggaeivgllktgsafyapaasaiqmaesy
lkdkkrvlpvaaqlsgqygvkdmyvgvptvigangveriieidldkdekaqfdksvasva
glceacigiapsl